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CASToR
1.0
Tomographic Reconstruction (PET/SPECT)
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| castor-datafileConversionEx.cc [code] | This program is an example code providing guidance regarding how to generate a PET CASToR datafile from any system datafile. It does not perform any conversion by itself and must be adjusted to the conversion of any system dataset. It uses a GATE model of a General Electric PET system as example. It implements the required calls to CASToR Datafile and Event objects and functions in order to write a dataset in the CASToR format, with or without optionnal correction factors (scatter, random, normalization coefficients, etc) |
| castor-GATEMacToGeom.cc [code] | This code allows the conversion of a GATE macro file defining a cylindricalPET or ecat geometry into a CASToR ASCII .geom file. This script currently only supports 'cylindricalPET' and 'ecat' systems. Two arguments are required : 1. The gate .mac file : enter file.mac. We suppose that there is all the geometry and the digitizer information in this file. 2. The output name : it will be a .geom file |
| castor-GATERootToCastor.cc [code] | This program convert a GATE datafile in root format to a list-mode datafile in CASToR format |
| castor-PetScannerLutEx.cc [code] | This program generates a CASToR Look-Up-Table (LUT) containing geometry information related to each crystal of a PET system. The LUT contains x,y,z cartesian position of the center of each crystals, as well as their transaxial angular orientations. The LUT files is composed of two files : (1) A binary file containing for each crystal: Cartesian positions (X,Y,Z) of the center of the crystals, and Vector orientation (X,Y,Z), corresponding to the angular orientation of each crystal (see documentation) (2) A header file containing several informations about the system. CASToR algorithms will keep a similar crystal indexation as the LUT was written, and load it in RAM This script uses a GATE model of a General Electric PET system as example |
| castor-proj.cc [code] | This is the main program of the analytic projection tool for CASToR It reads/parses/checks the command-line options provided by the user, initialize each manager classes with the correct set of options, and launch the projection algorithm (managed by oAnalyticProjection) |
| castor-recon.cc [code] | CASToR: Customizable and Advanced Software for Tomographic Reconstruction This is the main reconstruction program of the CASToR software. It reads/parses/checks the command-line options, initialize each manager classes with the correct set of options, and launch the reconstruction algorithm (currently managed by oIterativeAlgorithm). For list-mode datafiles, if a sensitivity image is not provided using "-sens", it is generated before reconstruction (managed by oSensitivityGenerator) |
| check_benchmark_pet_histogram.cc [code] | |
| check_benchmark_pet_list-mode.cc [code] | |
| check_benchmark_spect_histogram.cc [code] | |
| doxygen_mainpage.hh [code] | |
| gDataConversionUtilities.cc [code] | Implementation of class gDataConversionUtilities functions |
| gDataConversionUtilities.hh [code] | This file gathers various function dedicated to data conversion in order to convert various type of GATE files (macro file, root datafile) to the CASToR file formats |
| gOptions.cc [code] | Implementation of class gOptions functions |
| gOptions.hh [code] | This file is used for all kind of different functions designed for options parsing and ASCII file reading. All functions included here are not class members |
| gVariables.hh [code] | This header file is mainly used to declare some macro definitions and all includes needed from the standard c library |
| iDataFilePET.cc [code] | Implementation of class iDataFilePET |
| iDataFilePET.hh [code] | Declaration of class iDataFilePET |
| iDataFileSPECT.cc [code] | Implementation of class iDataFileSPECT |
| iDataFileSPECT.hh [code] | Declaration of class iDataFileSPECT |
| iDataFileTransmission.cc [code] | Implementation of class iDataFileTransmission |
| iDataFileTransmission.hh [code] | Declaration of class iDataFileTransmission |
| iDeformationElastic.cc [code] | Implementation of class iDeformationElastic |
| iDeformationElastic.hh [code] | Declaration of class iDeformationElastic |
| iDeformationRigid.cc [code] | Implementation of class iDeformationRigid |
| iDeformationRigid.hh [code] | Declaration of class iDeformationRigid |
| iDeformationTemplate.cc [code] | Implementation of class iDeformationTemplate |
| iDeformationTemplate.hh [code] | Declaration of class iDeformationTemplate |
| iDynamicModelTemplate.cc [code] | Implementation of class iDynamicModelTemplate |
| iDynamicModelTemplate.hh [code] | Declaration of class iDynamicModelTemplate |
| iEventHistoPET.cc [code] | Implementation of class iEventHistoPET |
| iEventHistoPET.hh [code] | Declaration of class iEventHistoPET |
| iEventHistoSPECT.cc [code] | Implementation of class iEventHistoSPECT |
| iEventHistoSPECT.hh [code] | Declaration of class iEventHistoSPECT |
| iEventListPET.cc [code] | Implementation of class iEventListPET |
| iEventListPET.hh [code] | Declaration of class iEventListPET |
| iEventListSPECT.cc [code] | Implementation of class iEventListSPECT |
| iEventListSPECT.hh [code] | Declaration of class iEventListSPECT |
| iEventNorm.cc [code] | Implementation of class iEventNorm |
| iEventNorm.hh [code] | Declaration of class iEventNorm |
| iEventPET.cc [code] | Implementation of class iEventPET |
| iEventPET.hh [code] | Declaration of class iEventPET |
| iEventSPECT.cc [code] | Implementation of class iEventSPECT |
| iEventSPECT.hh [code] | Declaration of class iEventSPECT |
| iEventTransmission.cc [code] | Implementation of class iEventTransmission |
| iEventTransmission.hh [code] | Declaration of class iEventTransmission |
| iImageConvolverStationaryGaussian.cc [code] | Implementation of class iImageConvolverStationaryGaussian |
| iImageConvolverStationaryGaussian.hh [code] | Declaration of class iImageConvolverStationaryGaussian |
| iImageConvolverTemplate.cc [code] | Implementation of class iImageConvolverTemplate |
| iImageConvolverTemplate.hh [code] | Declaration of class iImageConvolverTemplate |
| iImageProcessingTemplate.cc [code] | Implementation of class iImageProcessingTemplate |
| iImageProcessingTemplate.hh [code] | Declaration of class iImageProcessingTemplate |
| iOptimizerLandweber.cc [code] | Implementation of class iOptimizerLandweber |
| iOptimizerLandweber.hh [code] | Declaration of class iOptimizerLandweber |
| iOptimizerMLEM.cc [code] | Implementation of class iOptimizerMLEM |
| iOptimizerMLEM.hh [code] | Declaration of class iOptimizerMLEM |
| iOptimizerNEGML.cc [code] | Implementation of class iOptimizerNEGML |
| iOptimizerNEGML.hh [code] | Declaration of class iOptimizerNEGML |
| iOptimizerOriginalAML.cc [code] | Implementation of class iOptimizerOriginalAML |
| iOptimizerOriginalAML.hh [code] | Declaration of class iOptimizerOriginalAML |
| iOptimizerTemplate.cc [code] | Implementation of class iOptimizerTemplate |
| iOptimizerTemplate.hh [code] | Declaration of class iOptimizerTemplate |
| iPatlakModel.cc [code] | Implementation of class iPatlakModel |
| iPatlakModel.hh [code] | Declaration of class iPatlakModel |
| iProjectorClassicSiddon.cc [code] | Implementation of class iProjectorClassicSiddon |
| iProjectorClassicSiddon.hh [code] | Declaration of class iProjectorClassicSiddon |
| iProjectorIncrementalSiddon.cc [code] | Implementation of class iProjectorIncrementalSiddon |
| iProjectorIncrementalSiddon.hh [code] | Declaration of class iProjectorIncrementalSiddon |
| iProjectorIncrementalSiddonMulti.cc [code] | Implementation of class iProjectorIncrementalSiddonMulti |
| iProjectorIncrementalSiddonMulti.hh [code] | Declaration of class iProjectorIncrementalSiddonMulti |
| iProjectorIRIS.cc [code] | Implementation of class iProjectorIRIS |
| iProjectorIRIS.hh [code] | Declaration of class iProjectorIRIS |
| iProjectorJoseph.cc [code] | Implementation of class iProjectorJoseph |
| iProjectorJoseph.hh [code] | Declaration of class iProjectorJoseph |
| iProjectorTemplate.cc [code] | Implementation of class iProjectorTemplate |
| iProjectorTemplate.hh [code] | Declaration of class iProjectorTemplate |
| iScannerPET.cc [code] | Implementation of class iScannerPET |
| iScannerPET.hh [code] | Declaration of class iScannerPET |
| iScannerSPECTConv.cc [code] | Implementation of class iScannerSPECTConv |
| iScannerSPECTConv.hh [code] | Declaration of class iScannerSPECTConv |
| oAnalyticProjection.cc [code] | Implementation of class oAnalyticProjection |
| oAnalyticProjection.hh [code] | Declaration of class oAnalyticProjection |
| oComputeProjection.cc [code] | Implementation of class oComputeProjection |
| oComputeProjection.hh [code] | Declaration of class oComputeProjection |
| oDeformationManager.cc [code] | Implementation of class oDeformationManager |
| oDeformationManager.hh [code] | Declaration of class oDeformationManager |
| oDirentWin32.hh [code] | |
| oDynamicDataManager.cc [code] | Implementation of class oDynamicDataManager |
| oDynamicDataManager.hh [code] | Declaration of class oDynamicDataManager |
| oDynamicModelManager.cc [code] | Implementation of class oDynamicModelManager |
| oDynamicModelManager.hh [code] | Declaration of class oDynamicModelManager |
| oImageConvolverManager.cc [code] | Implementation of class oImageConvolverManager |
| oImageConvolverManager.hh [code] | Declaration of class oImageConvolverManager |
| oImageDimensionsAndQuantification.cc [code] | Implementation of class oImageDimensionsAndQuantification |
| oImageDimensionsAndQuantification.hh [code] | Declaration of class oImageDimensionsAndQuantification |
| oImageProcessingManager.cc [code] | Implementation of class oImageProcessingManager |
| oImageProcessingManager.hh [code] | Declaration of class oImageProcessingManager |
| oImageSpace.cc [code] | Implementation of class oImageSpace |
| oImageSpace.hh [code] | Declaration of class oImageSpace |
| oInterfileIO.cc [code] | Implementation of class Interfile management functions |
| oInterfileIO.hh [code] | This group of functions manages Interfile image file format |
| oIterativeAlgorithm.cc [code] | Implementation of class oIterativeAlgorithm |
| oIterativeAlgorithm.hh [code] | Declaration of class oIterativeAlgorithm |
| oMatrix.cc [code] | Implementation of class oMatrix |
| oMatrix.hh [code] | Declaration of class oMatrix |
| oOptimizerManager.cc [code] | Implementation of class oOptimizerManager |
| oOptimizerManager.hh [code] | Declaration of class oOptimizerManager |
| oProjectionLine.cc [code] | Implementation of class oProjectionLine |
| oProjectionLine.hh [code] | Declaration of class oProjectionLine |
| oProjectorManager.cc [code] | Implementation of class oProjectorManager |
| oProjectorManager.hh [code] | Declaration of class oProjectorManager |
| oSensitivityGenerator.cc [code] | Implementation of class oSensitivityGenerator |
| oSensitivityGenerator.hh [code] | Declaration of class oSensitivityGenerator |
| oSystemMatrix.cc [code] | Implementation of class oSystemMatrix |
| oSystemMatrix.hh [code] | Declaration of class oSystemMatrix |
| sAddonManager.cc [code] | Implementation of class sAddonManager |
| sAddonManager.hh [code] | Declaration of class sAddonManager |
| sOutputManager.cc [code] | Implementation of class sOutputManager |
| sOutputManager.hh [code] | Declaration of class sOutputManager |
| sRNG.cc [code] | Implementation of class sRNG |
| sRNG.hh [code] | Declaration of class sRNG |
| sScannerManager.cc [code] | Implementation of class sScannerManager |
| sScannerManager.hh [code] | Declaration of class sScannerManager |
| vDataFile.cc [code] | Implementation of class vDataFile |
| vDataFile.hh [code] | Declaration of class vDataFile |
| vDeformation.cc [code] | Implementation of class vDeformation |
| vDeformation.hh [code] | Declaration of class vDeformation |
| vDynamicModel.cc [code] | Implementation of class vDynamicModel |
| vDynamicModel.hh [code] | Declaration of class vDynamicModel |
| vEvent.cc [code] | Implementation of class vEvent |
| vEvent.hh [code] | Declaration of class vEvent |
| vImageConvolver.cc [code] | Implementation of class vImageConvolver |
| vImageConvolver.hh [code] | Declaration of class vImageConvolver |
| vImageProcessingModule.cc [code] | Implementation of class vImageProcessingModule |
| vImageProcessingModule.hh [code] | Declaration of class vImageProcessingModule |
| vOptimizer.cc [code] | Implementation of class vOptimizer |
| vOptimizer.hh [code] | Declaration of class vOptimizer |
| vPenalty.cc [code] | Implementation of class vPenalty |
| vPenalty.hh [code] | Declaration of class vPenalty |
| vProjector.cc [code] | Implementation of class vProjector |
| vProjector.hh [code] | Declaration of class vProjector |
| vScanner.cc [code] | Implementation of class vScanner |
| vScanner.hh [code] | Declaration of class vScanner |
1.7.6.1
