Implementation of class gDataConversionUtilities functions. More...

#include "gVariables.hh"
#include "gDataConversionUtilities.hh"
#include <iomanip>

Functions
vector< string >	CheckGATECommand (const string &a_key, const string &a_line)
	Check if the line contains the provided GATE command. In this case, parse the line and returns the values in a vector of strings.
vector< string >	Split (string a_line)
	Split the line provided in parameter into a vector of strings (separator is blankspace)
void	ConvertValuesTomm (vector< string > &ap_v)
	Check if the vector of strings passed in parameter contains the 'cm' unit In this case, convert all its values in mm.
template<class T >
int	WriteVector (ofstream &file, const string &a_key, vector< T > a_vals)
	Write the key and its values in the file provided in parameter.
template int	WriteVector (ofstream &file, const string &a_key, vector< double > a_vals)
int	WriteVector (ofstream &file, const string &a_key, vector< string > a_vals)
	Write the key and its values in the file provided in parameter.
int	WriteVector (ofstream &file, const string &a_key, vector< vector< string > > a_vals)
	Write the key and its values contained in a 2 level vector of strings in the file provided in parameter.
int	GetGATEMacFiles (const string &a_pathMac, vector< string > &ap_pathToMacFiles)
int	GetGATESystemType (const string &a_pathMac)
	Read a GATE macro file and identify the system type from the 'gate/systems/' command lines.
int	GetGATEAliasesCylindrical (vector< string > path_mac_files, string &rsector_name, string &module_name, string &submodule_name, string &crystal_name, vector< string > &layers_name, int vb)
int	GetGATEAliasesEcat (vector< string > path_mac_files, string &block_name, string &crystal_name, int vb)
	Loop over a list of path to GATE macro files passed in parameter to recover aliases of the different parts of an ecat system.
int	GetGATEAliasesSPECT (vector< string > path_mac_files, string &base_name, string &crystal_name, string &pixel_name, int vb)
	Loop over a list of path to GATE macro files passed in parameter to recover aliases of the different parts of an ecat system.
uint32_t	ConvertIDecat (int32_t nBlocksPerRing, int32_t nBlocksLine, int32_t nCrystalsTransaxial, int32_t nCrystalsAxial, int32_t crystalID, int32_t blockID)
uint32_t	ConvertIDSPECTRoot1 (int32_t a_headID, float_t a_rotAngle, float_t a_angStep, uint32_t a_nProjectionsByHead)
uint32_t	ConvertIDSPECTRoot2 (uint32_t a_nbSimulatedPixels, uint32_t a_nPixTrs, uint32_t a_nPixAxl, int32_t a_headID, int32_t a_crystalID, int32_t a_pixelID, float_t a_rotAngle, float_t a_headAngPitch, float_t a_crystalSizeAxl, float_t a_crystalSizeTrs, float_t a_gPosX, float_t a_gPosY, float_t a_gPosZ)
uint32_t	ConvertIDcylindrical (uint32_t nRsectorsPerRing, uint32_t nModulesTransaxial, uint32_t nModulesAxial, uint32_t nSubmodulesTransaxial, uint32_t nSubmodulesAxial, uint32_t nCrystalsTransaxial, uint32_t nCrystalsAxial, uint8_t nLayers, uint32_t *nCrystalPerLayer, vector< uint32_t > nLayersRptTransaxial, vector< uint32_t > nLayersRptAxial, int32_t layerID, int32_t crystalID, int32_t submoduleID, int32_t moduleID, int32_t rsectorID)
	Compute a CASToR crystal index of a GATE cylindricalPET system from its indexes (rsector/module/submodule/crystal) and the system layout.
int	ComputeKindGATEEvent (uint32_t eventID1, uint32_t eventID2, int comptonPhantom1, int comptonPhantom2, int rayleighPhantom1, int rayleighPhantom2)
int	ReadMacCylindrical (string a_pathMac, uint8_t &nLayers, uint32_t *nb_crystal_per_layer, uint32_t &nCrystalsTot, uint32_t &nCrystalsAxial, uint32_t &nCrystalsTransaxial, vector< uint32_t > &nLayersRptAxial, vector< uint32_t > &nLayersRptTransaxial, uint32_t &nSubmodulesAxial, uint32_t &nSubmodulesTransaxial, uint32_t &nModulesAxial, uint32_t &nModulesTransaxial, uint32_t &nRsectorsPerRing, uint32_t &start_time_ms, uint32_t &duration_ms, int vb)
int	ReadMacECAT (string a_pathMac, uint32_t &nCrystalsTot, uint32_t &nCrystalsAxial, uint32_t &nCrystalsTransaxial, uint32_t &nBlocksLine, uint32_t &nBlocksPerRing, uint32_t &start_time_ms, uint32_t &duration_ms, int vb)
int	ReadMacSPECT (string a_pathMac, float_t &a_distToDetector, uint32_t &a_nHeads, uint32_t &a_nPixAxl, uint32_t &a_nPixTrs, float_t &a_crystalSizeAxl, float_t &a_crystalSizeTrs, uint32_t &a_nProjectionsTot, uint32_t &a_nProjectionsByHead, float_t &a_head1stAngle, float_t &a_headAngPitch, float_t &a_headAngStepDeg, int &a_headRotDirection, uint32_t &a_start_time_ms, uint32_t &a_duration_ms, int vb)
int	ReadIntfSPECT (string a_pathIntf, float_t &a_distToDetector, uint32_t &a_nHeads, uint32_t &a_nPixAxl, uint32_t &a_nPixTrs, float_t &a_crystalSizeAxl, float_t &a_crystalSizeTrs, uint32_t &a_nProjectionsTot, uint32_t &a_nProjectionsByHead, float_t &a_head1stAngle, float_t &a_headAngPitchDeg, float_t &a_headAngStepDeg, int &a_headRotDirection, uint32_t &a_start_time_ms, uint32_t &a_duration_ms, int vb)
int	CreateGeomWithCylindrical (string a_pathMac, string a_pathGeom)
	Read a GATE macro file containing the description of a cylindricalPET system, and convert it to a geom file.
int	CreateGeomWithECAT (string a_pathMac, string a_pathGeom)
	Read a GATE macro file containing the description of an ecat system, and convert it to a geom file.
int	CreateGeomWithSPECT (string a_pathMac, string a_pathGeom)

Detailed Description

Implementation of class gDataConversionUtilities functions.

Definition in file gDataConversionUtilities.cc.

Function Documentation

vector<string> CheckGATECommand	(	const string &	a_key,
		const string &	a_line
	)

Check if the line contains the provided GATE command. In this case, parse the line and returns the values in a vector of strings.

Parameters:

a_key,:	string containing a GATE command to recover
a_line	: string containing the line to check

Values are converted in mm if 'cm' is found in the line

Returns:: the vector of strings containing the elements of the line.

Definition at line 41 of file gDataConversionUtilities.cc.

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int ComputeKindGATEEvent	(	uint32_t	eventID1,
		uint32_t	eventID2,
		int	comptonPhantom1,
		int	comptonPhantom2,
		int	rayleighPhantom1,
		int	rayleighPhantom2
	)

Definition at line 925 of file gDataConversionUtilities.cc.

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uint32_t ConvertIDcylindrical	(	uint32_t	nRsectorsPerRing,
		uint32_t	nModulesTransaxial,
		uint32_t	nModulesAxial,
		uint32_t	nSubmodulesTransaxial,
		uint32_t	nSubmodulesAxial,
		uint32_t	nCrystalsTransaxial,
		uint32_t	nCrystalsAxial,
		uint8_t	nLayers,
		uint32_t *	nCrystalPerLayer,
		vector< uint32_t >	nLayersRptTransaxial,
		vector< uint32_t >	nLayersRptAxial,
		int32_t	layerID,
		int32_t	crystalID,
		int32_t	submoduleID,
		int32_t	moduleID,
		int32_t	rsectorID
	)

Compute a CASToR crystal index of a GATE cylindricalPET system from its indexes (rsector/module/submodule/crystal) and the system layout.

Parameters:

nRsectorsPerRing
nModulesTransaxial
nModulesAxial
nSubmodulesTransaxial
nSubmodulesAxial
nCrystalsTransaxial
nCrystalsAxial
nLayers
nb_crystal_per_layer
nLayersRptTransaxial
nLayersRptAxial
layerID
crystalID
submoduleID
moduleID
rsectorID

Returns:: CASToR crystal index

Definition at line 814 of file gDataConversionUtilities.cc.

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uint32_t ConvertIDecat	(	int32_t	nBlocksPerRing,
		int32_t	nBlocksLine,
		int32_t	nCrystalsTransaxial,
		int32_t	nCrystalsAxial,
		int32_t	crystalID,
		int32_t	blockID
	)

Definition at line 655 of file gDataConversionUtilities.cc.

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uint32_t ConvertIDSPECTRoot1	(	int32_t	a_headID,
		float_t	a_rotAngle,
		float_t	a_angStep,
		uint32_t	a_nProjectionsByHead
	)

Definition at line 689 of file gDataConversionUtilities.cc.

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uint32_t ConvertIDSPECTRoot2	(	uint32_t	a_nbSimulatedPixels,
		uint32_t	a_nPixTrs,
		uint32_t	a_nPixAxl,
		int32_t	a_headID,
		int32_t	a_crystalID,
		int32_t	a_pixelID,
		float_t	a_rotAngle,
		float_t	a_headAngPitch,
		float_t	a_crystalSizeAxl,
		float_t	a_crystalSizeTrs,
		float_t	a_gPosX,
		float_t	a_gPosY,
		float_t	a_gPosZ
	)

Definition at line 728 of file gDataConversionUtilities.cc.

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void ConvertValuesTomm ( vector< string > & ap_v )

Check if the vector of strings passed in parameter contains the 'cm' unit In this case, convert all its values in mm.

Parameters:

ap_v	: vector of strings

Definition at line 101 of file gDataConversionUtilities.cc.

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int CreateGeomWithCylindrical	(	string	a_pathMac,
		string	a_pathGeom
	)

Read a GATE macro file containing the description of a cylindricalPET system, and convert it to a geom file.

Parameters:

a_pathMac	: string containing the path to a GATE macro file
a_pathGeom	: string containing the path to a CASToR output geom file

Returns:: 0 if success, positive value otherwise

Definition at line 2104 of file gDataConversionUtilities.cc.

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int CreateGeomWithECAT	(	string	a_pathMac,
		string	a_pathGeom
	)

Read a GATE macro file containing the description of an ecat system, and convert it to a geom file.

Parameters:

a_pathMac	: string containing the path to a GATE macro file
a_pathGeom	: string containing the path to a CASToR output geom file

Returns:: 0 if success, positive value otherwise

Definition at line 3020 of file gDataConversionUtilities.cc.

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int CreateGeomWithSPECT	(	string	a_pathMac,
		string	a_pathGeom
	)

Definition at line 3474 of file gDataConversionUtilities.cc.

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int GetGATEAliasesCylindrical	(	vector< string >	path_mac_files,
		string &	rsector_name,
		string &	module_name,
		string &	submodule_name,
		string &	crystal_name,
		vector< string > &	layers_name,
		int	vb
	)

Definition at line 362 of file gDataConversionUtilities.cc.

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int GetGATEAliasesEcat	(	vector< string >	path_mac_files,
		string &	block_name,
		string &	crystal_name,
		int	vb
	)

Loop over a list of path to GATE macro files passed in parameter to recover aliases of the different parts of an ecat system.

Parameters:

path_mac_files
block_name
crystal_name
vb

Returns:: 0 if success, positive value otherwise

Definition at line 485 of file gDataConversionUtilities.cc.

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int GetGATEAliasesSPECT	(	vector< string >	path_mac_files,
		string &	base_name,
		string &	crystal_name,
		string &	pixel_name,
		int	vb
	)

Loop over a list of path to GATE macro files passed in parameter to recover aliases of the different parts of an ecat system.

Parameters:

path_mac_files
base_name
crystal_name
pixel_name
vb

Returns:: 0 if success, positive value otherwise

Definition at line 569 of file gDataConversionUtilities.cc.

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int GetGATEMacFiles	(	const string &	a_pathMac,
		vector< string > &	ap_pathToMacFiles
	)

Definition at line 232 of file gDataConversionUtilities.cc.

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int GetGATESystemType ( const string & a_pathMac )

Read a GATE macro file and identify the system type from the 'gate/systems/' command lines.

Parameters:

a_pathMac : path to a GATE macro file

Returns:: system type, as described by the macro GATE_SYS_TYPE

Definition at line 273 of file gDataConversionUtilities.cc.

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int ReadIntfSPECT	(	string	a_pathIntf,
		float_t &	a_distToDetector,
		uint32_t &	a_nHeads,
		uint32_t &	a_nPixAxl,
		uint32_t &	a_nPixTrs,
		float_t &	a_crystalSizeAxl,
		float_t &	a_crystalSizeTrs,
		uint32_t &	a_nProjectionsTot,
		uint32_t &	a_nProjectionsByHead,
		float_t &	a_head1stAngle,
		float_t &	a_headAngPitchDeg,
		float_t &	a_headAngStepDeg,
		int &	a_headRotDirection,
		uint32_t &	a_start_time_ms,
		uint32_t &	a_duration_ms,
		int	vb
	)

Definition at line 1874 of file gDataConversionUtilities.cc.

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int ReadMacCylindrical	(	string	a_pathMac,
		uint8_t &	nLayers,
		uint32_t *	nb_crystal_per_layer,
		uint32_t &	nCrystalsTot,
		uint32_t &	nCrystalsAxial,
		uint32_t &	nCrystalsTransaxial,
		vector< uint32_t > &	nLayersRptAxial,
		vector< uint32_t > &	nLayersRptTransaxial,
		uint32_t &	nSubmodulesAxial,
		uint32_t &	nSubmodulesTransaxial,
		uint32_t &	nModulesAxial,
		uint32_t &	nModulesTransaxial,
		uint32_t &	nRsectorsPerRing,
		uint32_t &	start_time_ms,
		uint32_t &	duration_ms,
		int	vb
	)

Definition at line 979 of file gDataConversionUtilities.cc.

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int ReadMacECAT	(	string	a_pathMac,
		uint32_t &	nCrystalsTot,
		uint32_t &	nCrystalsAxial,
		uint32_t &	nCrystalsTransaxial,
		uint32_t &	nBlocksLine,
		uint32_t &	nBlocksPerRing,
		uint32_t &	start_time_ms,
		uint32_t &	duration_ms,
		int	vb
	)

Definition at line 1305 of file gDataConversionUtilities.cc.

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int ReadMacSPECT	(	string	a_pathMac,
		float_t &	a_distToDetector,
		uint32_t &	a_nHeads,
		uint32_t &	a_nPixAxl,
		uint32_t &	a_nPixTrs,
		float_t &	a_crystalSizeAxl,
		float_t &	a_crystalSizeTrs,
		uint32_t &	a_nProjectionsTot,
		uint32_t &	a_nProjectionsByHead,
		float_t &	a_head1stAngle,
		float_t &	a_headAngPitch,
		float_t &	a_headAngStepDeg,
		int &	a_headRotDirection,
		uint32_t &	a_start_time_ms,
		uint32_t &	a_duration_ms,
		int	vb
	)

Definition at line 1525 of file gDataConversionUtilities.cc.

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vector<string> Split ( string a_line )

Split the line provided in parameter into a vector of strings (separator is blankspace)

Parameters:

a_line : string to split

Returns:: vector of string containing the splitted elements of the line

Definition at line 76 of file gDataConversionUtilities.cc.

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template<class T >

int WriteVector	(	ofstream &	file,
		const string &	a_key,
		vector< T >	a_vals
	)

Write the key and its values in the file provided in parameter.

Parameters:

file	: the output file
a_key	: key to write
a_vals	: vector containing the key values

Returns:: 0 if success, positive value otherwise

Definition at line 130 of file gDataConversionUtilities.cc.

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template int WriteVector	(	ofstream &	file,
		const string &	a_key,
		vector< double >	a_vals
	)

int WriteVector	(	ofstream &	file,
		const string &	a_key,
		vector< string >	a_vals
	)

Write the key and its values in the file provided in parameter.

Parameters:

file	: the output file
a_key	: key to write
a_vals	: vector containing the key values

Returns:: 0 if success, positive value otherwise

Definition at line 169 of file gDataConversionUtilities.cc.

int WriteVector	(	ofstream &	file,
		const string &	a_key,
		vector< vector< string > >	a_vals
	)

Write the key and its values contained in a 2 level vector of strings in the file provided in parameter.

Parameters:

file	: the output file
a_key	: key to write
a_vals	: vector containing the key values

Returns:: 0 if success, positive value otherwise

Definition at line 204 of file gDataConversionUtilities.cc.

Functions

Detailed Description

Function Documentation