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CASToR
2.0
Tomographic Reconstruction (PET/SPECT/CT)
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  castor-datafileConversionEx.cc | This program is an example code providing guidance regarding how to generate a PET CASToR datafile from any system datafile. It does not perform any conversion by itself and must be adjusted to the conversion of any system dataset. It uses a GATE model of a General Electric PET system as example. It implements the required calls to CASToR DataFile and Event objects and functions in order to write a dataset in the CASToR format, with or without optionnal correction factors (scatter, random, normalization coefficients, etc) |
| castor-datafileExplorer.cc | This program can be used to explore a datafile, event by event |
| castor-GATEMacToGeom.cc | This code allows the conversion of a GATE macro file defining a cylindricalPET or ecat geometry into a CASToR ASCII .geom file. This script currently only supports 'cylindricalPET' and 'ecat' systems. Two arguments are required : |
| castor-GATERootToCastor.cc | This program convert a GATE datafile in root format to a list-mode datafile in CASToR format |
| castor-PetScannerLutEx.cc | This program generates a CASToR Look-Up-Table (LUT) containing geometry information related to each crystal of a PET system. The LUT contains x,y,z cartesian position of the center of each crystals, as well as their transaxial angular orientations. The LUT files is composed of two files : (1) A binary file containing for each crystal: Cartesian positions (X,Y,Z) of the center of the crystals, and Vector orientation (X,Y,Z), corresponding to the angular orientation of each crystal (see documentation) (2) A header file containing several informations about the system. CASToR algorithms will keep a similar crystal indexation as the LUT was written, and load it in RAM This script uses a GATE model of a General Electric PET system as example |
| castor-recon.cc | CASToR: Customizable and Advanced Software for Tomographic Reconstruction This is the main reconstruction program of the CASToR software. It reads/parses/checks the command-line options, initialize each manager classes with the correct set of options, and launch the reconstruction algorithm (currently managed by oIterativeAlgorithm). For list-mode datafiles, if a sensitivity image is not provided using "-sens", it is generated before reconstruction (managed by oSensitivityGenerator) |
| castor-scannerLUTExplorer.cc | This program can be used to visualize a scanner Look-Up-Table (geometric position and orientation of the system crystals/pixels), element by element |
| doxygen_mainpage.hh | |
| gDataConversionUtilities.cc | Implementation of class gDataConversionUtilities functions |
| gDataConversionUtilities.hh | This file gathers various function dedicated to data conversion in order to convert various type of GATE files (macro file, root datafile) to the CASToR file formats |
| gOptions.cc | Implementation of class gOptions functions |
| gOptions.hh | This file is used for all kind of different functions designed for options parsing and ASCII file reading. All functions included here are not class members |
| gVariables.hh | This header file is mainly used to declare some macro definitions and all includes needed from the standard c library |
| iDataFileCT.cc | Implementation of class iDataFileCT |
| iDataFileCT.hh | Declaration of class iDataFileCT |
| iDataFilePET.cc | Implementation of class iDataFilePET |
| iDataFilePET.hh | Declaration of class iDataFilePET |
| iDataFileSPECT.cc | Implementation of class iDataFileSPECT |
| iDataFileSPECT.hh | Declaration of class iDataFileSPECT |
| iDeformationTemplate.cc | Implementation of class iDeformationTemplate |
| iDeformationTemplate.hh | Declaration of class iDeformationTemplate |
| iDynamicModelTemplate.cc | Implementation of class iDynamicModelTemplate |
| iDynamicModelTemplate.hh | Declaration of class iDynamicModelTemplate |
| iEventCT.cc | Implementation of class iEventCT |
| iEventCT.hh | Declaration of class iEventCT |
| iEventHistoCT.cc | Implementation of class iEventHistoCT |
| iEventHistoCT.hh | Declaration of class iEventHistoCT |
| iEventHistoPET.cc | Implementation of class iEventHistoPET |
| iEventHistoPET.hh | Declaration of class iEventHistoPET |
| iEventHistoSPECT.cc | Implementation of class iEventHistoSPECT |
| iEventHistoSPECT.hh | Declaration of class iEventHistoSPECT |
| iEventListCT.cc | Implementation of class iEventListCT |
| iEventListCT.hh | Declaration of class iEventListCT |
| iEventListPET.cc | Implementation of class iEventListPET |
| iEventListPET.hh | Declaration of class iEventListPET |
| iEventListSPECT.cc | Implementation of class iEventListSPECT |
| iEventListSPECT.hh | Declaration of class iEventListSPECT |
| iEventNorm.cc | Implementation of class iEventNorm |
| iEventNorm.hh | Declaration of class iEventNorm |
| iEventPET.cc | Implementation of class iEventPET |
| iEventPET.hh | Declaration of class iEventPET |
| iEventSPECT.cc | Implementation of class iEventSPECT |
| iEventSPECT.hh | Declaration of class iEventSPECT |
| iImageConvolverStationaryGaussian.cc | Implementation of class iImageConvolverStationaryGaussian |
| iImageConvolverStationaryGaussian.hh | Declaration of class iImageConvolverStationaryGaussian |
| iImageConvolverTemplate.cc | Implementation of class iImageConvolverTemplate |
| iImageConvolverTemplate.hh | Declaration of class iImageConvolverTemplate |
| iImageProcessingTemplate.cc | Implementation of class iImageProcessingTemplate |
| iImageProcessingTemplate.hh | Declaration of class iImageProcessingTemplate |
| iOptimizerLandweber.cc | Implementation of class iOptimizerLandweber |
| iOptimizerLandweber.hh | Declaration of class iOptimizerLandweber |
| iOptimizerMLEM.cc | Implementation of class iOptimizerMLEM |
| iOptimizerMLEM.hh | Declaration of class iOptimizerMLEM |
| iOptimizerMLTR.cc | Implementation of class iOptimizerMLTR |
| iOptimizerMLTR.hh | Declaration of class iOptimizerMLTR |
| iOptimizerNEGML.cc | Implementation of class iOptimizerNEGML |
| iOptimizerNEGML.hh | Declaration of class iOptimizerNEGML |
| iOptimizerOriginalAML.cc | Implementation of class iOptimizerOriginalAML |
| iOptimizerOriginalAML.hh | Declaration of class iOptimizerOriginalAML |
| iOptimizerTemplate.cc | Implementation of class iOptimizerTemplate |
| iOptimizerTemplate.hh | Declaration of class iOptimizerTemplate |
| iProjectorClassicSiddon.cc | Implementation of class iProjectorClassicSiddon |
| iProjectorClassicSiddon.hh | Declaration of class iProjectorClassicSiddon |
| iProjectorDistanceDriven.cc | Implementation of class iProjectorDistanceDriven |
| iProjectorDistanceDriven.hh | Declaration of class iProjectorDistanceDriven |
| iProjectorIncrementalSiddon.cc | Implementation of class iProjectorIncrementalSiddon |
| iProjectorIncrementalSiddon.hh | Declaration of class iProjectorIncrementalSiddon |
| iProjectorIncrementalSiddonMulti.cc | Implementation of class iProjectorIncrementalSiddonMulti |
| iProjectorIncrementalSiddonMulti.hh | Declaration of class iProjectorIncrementalSiddonMulti |
| iProjectorIRIS.cc | Implementation of class iProjectorIRIS |
| iProjectorIRIS.hh | Declaration of class iProjectorIRIS |
| iProjectorJoseph.cc | Implementation of class iProjectorJoseph |
| iProjectorJoseph.hh | Declaration of class iProjectorJoseph |
| iProjectorTemplate.cc | Implementation of class iProjectorTemplate |
| iProjectorTemplate.hh | Declaration of class iProjectorTemplate |
| iScannerCT.cc | Implementation of class iScannerCT |
| iScannerCT.hh | Declaration of class iScannerCT |
| iScannerPET.cc | Implementation of class iScannerPET |
| iScannerPET.hh | Declaration of class iScannerPET |
| iScannerSPECTConv.cc | Implementation of class iScannerSPECTConv |
| iScannerSPECTConv.hh | Declaration of class iScannerSPECTConv |
| oDeformationManager.cc | Implementation of class oDeformationManager |
| oDeformationManager.hh | Declaration of class oDeformationManager |
| oDirentWin32.hh | |
| oDynamicDataManager.cc | Implementation of class oDynamicDataManager |
| oDynamicDataManager.hh | Declaration of class oDynamicDataManager |
| oDynamicModelManager.cc | Implementation of class oDynamicModelManager |
| oDynamicModelManager.hh | Declaration of class oDynamicModelManager |
| oImageConvolverManager.cc | Implementation of class oImageConvolverManager |
| oImageConvolverManager.hh | Declaration of class oImageConvolverManager |
| oImageDimensionsAndQuantification.cc | Implementation of class oImageDimensionsAndQuantification |
| oImageDimensionsAndQuantification.hh | Declaration of class oImageDimensionsAndQuantification |
| oImageProcessingManager.cc | Implementation of class oImageProcessingManager |
| oImageProcessingManager.hh | Declaration of class oImageProcessingManager |
| oImageSpace.cc | Implementation of class oImageSpace |
| oImageSpace.hh | Declaration of class oImageSpace |
| oInterfileIO.cc | Implementation of class Interfile management functions |
| oInterfileIO.hh | This group of functions manages Interfile image file format |
| oIterativeAlgorithm.cc | Implementation of class oIterativeAlgorithm |
| oIterativeAlgorithm.hh | Declaration of class oIterativeAlgorithm |
| oMatrix.cc | Implementation of class oMatrix |
| oMatrix.hh | Declaration of class oMatrix |
| oMemoryMapped.cc | Implementation of file to memory mapping |
| oMemoryMapped.hh | Implementation of file to memory mapping |
| oOptimizerManager.cc | Implementation of class oOptimizerManager |
| oOptimizerManager.hh | Declaration of class oOptimizerManager |
| oProjectionLine.cc | Implementation of class oProjectionLine |
| oProjectionLine.hh | Declaration of class oProjectionLine |
| oProjectorManager.cc | Implementation of class oProjectorManager |
| oProjectorManager.hh | Declaration of class oProjectorManager |
| oSensitivityGenerator.cc | Implementation of class oSensitivityGenerator |
| oSensitivityGenerator.hh | Declaration of class oSensitivityGenerator |
| oSystemMatrix.cc | Implementation of class oSystemMatrix |
| oSystemMatrix.hh | Declaration of class oSystemMatrix |
| sAddonManager.cc | Implementation of class sAddonManager |
| sAddonManager.hh | Declaration of class sAddonManager |
| sChronoManager.cc | Implementation of class sChronoManager |
| sChronoManager.hh | Declaration of class sChronoManager |
| sOutputManager.cc | Implementation of class sOutputManager |
| sOutputManager.hh | Declaration of class sOutputManager |
| sRandomNumberGenerator.cc | Implementation of class sRandomNumberGenerator |
| sRandomNumberGenerator.hh | Declaration of class sRandomNumberGenerator |
| sScannerManager.cc | Implementation of class sScannerManager |
| sScannerManager.hh | Declaration of class sScannerManager |
| vDataFile.cc | Implementation of class vDataFile |
| vDataFile.hh | Declaration of class vDataFile |
| vDeformation.cc | Implementation of class vDeformation |
| vDeformation.hh | Declaration of class vDeformation |
| vDynamicModel.cc | Implementation of class vDynamicModel |
| vDynamicModel.hh | Declaration of class vDynamicModel |
| vEvent.cc | Implementation of class vEvent |
| vEvent.hh | Declaration of class vEvent |
| vImageConvolver.cc | Implementation of class vImageConvolver |
| vImageConvolver.hh | Declaration of class vImageConvolver |
| vImageProcessingModule.cc | Implementation of class vImageProcessingModule |
| vImageProcessingModule.hh | Declaration of class vImageProcessingModule |
| vOptimizer.cc | Implementation of class vOptimizer |
| vOptimizer.hh | Declaration of class vOptimizer |
| vPenalty.cc | Implementation of class vPenalty |
| vPenalty.hh | Declaration of class vPenalty |
| vProjector.cc | Implementation of class vProjector |
| vProjector.hh | Declaration of class vProjector |
| vScanner.cc | Implementation of class vScanner |
 vScanner.hh | Declaration of class vScanner |
1.8.6
