CASToR  3.2
Tomographic Reconstruction (PET/SPECT/CT)
File List
Here is a list of all files with brief descriptions:
 code/toolkits/castor-datafileConversionEx.ccThis program is an example code providing guidance regarding how to generate a PET CASToR datafile from any system datafile.
It does not perform any conversion by itself and must be adjusted to the conversion of any system dataset. It uses a GATE model of a General Electric PET system as example.
It implements the required calls to CASToR DataFile and Event objects and functions in order to write a dataset in the CASToR format, with or without optionnal correction factors (scatter, random, normalization coefficients, etc)
 toolkits/castor-datafileConversionEx.ccThis program is an example code providing guidance regarding how to generate a PET CASToR datafile from any system datafile.
It does not perform any conversion by itself and must be adjusted to the conversion of any system dataset. It uses a GATE model of a General Electric PET system as example.
It implements the required calls to CASToR DataFile and Event objects and functions in order to write a dataset in the CASToR format, with or without optionnal correction factors (scatter, random, normalization coefficients, etc)
 code/toolkits/castor-datafileExplorer.ccThis program can be used to explore a datafile, event by event
 toolkits/castor-datafileExplorer.ccThis program can be used to explore a datafile, event by event
 code/toolkits/castor-datafilePosteriorBootstrap.ccThis program is used to create a resampled histogram datafile for the posterior bootstrap reconstruction see "Reconstruction, analysis and interpretation of posterior probability distributions of PET images, using the posterior bootstrap" by Marina Filipovic et al., PMB 2021
 toolkits/castor-datafilePosteriorBootstrap.ccThis program is used to create a resampled histogram datafile for the posterior bootstrap reconstruction see "Reconstruction, analysis and interpretation of posterior probability distributions of PET images, using the posterior bootstrap" by Marina Filipovic et al., PMB 2021
 code/toolkits/castor-datafileShuffler.ccThis program is used to shuffle the events order of a histogram datafile
 toolkits/castor-datafileShuffler.ccThis program is used to shuffle the events order of a histogram datafile
 code/toolkits/castor-GATEMacToGeom.ccThis code allows the conversion of a GATE macro file defining a cylindricalPET or ecat geometry into a CASToR ASCII .geom file.
This script currently only supports 'cylindricalPET' and 'ecat' systems.
Two arguments are required :
 toolkits/castor-GATEMacToGeom.ccThis code allows the conversion of a GATE macro file defining a cylindricalPET or ecat geometry into a CASToR ASCII .geom file.
This script currently only supports 'cylindricalPET' and 'ecat' systems.
Two arguments are required :
 code/toolkits/castor-GATERootToCastor.ccThis program convert a GATE datafile in root format to a list-mode datafile in CASToR format
 toolkits/castor-GATERootToCastor.ccThis program convert a GATE datafile in root format to a list-mode datafile in CASToR format
 code/toolkits/castor-imageDynamicTools.ccThis program convert a GATE datafile in root format to a list-mode datafile in CASToR format
 toolkits/castor-imageDynamicTools.ccThis program convert a GATE datafile in root format to a list-mode datafile in CASToR format
 castor-includeNormIntoDatafilePET.ccThis program is used to merge datafiles
 code/toolkits/castor-makeReplicates.ccThis program is used to build replicates of less statistics than the provided input list-mode file
 toolkits/castor-makeReplicates.ccThis program is used to build replicates of less statistics than the provided input list-mode file
 code/toolkits/castor-mergeBedPositions.ccThis program is used to merge a group of images corresponding to multiple bed positions reconstructed separately
 toolkits/castor-mergeBedPositions.ccThis program is used to merge a group of images corresponding to multiple bed positions reconstructed separately
 castor-norm.ccThis program is used to compute normalization factors from a histogram datafile
 code/toolkits/castor-PetScannerLutEx.ccThis program generates a CASToR Look-Up-Table (LUT) containing geometry information related to each crystal of a PET system.
The LUT contains x,y,z cartesian position of the center of each crystals, as well as their transaxial angular orientations.
The LUT files is composed of two files :
(1) A binary file containing for each crystal: Cartesian positions (X,Y,Z) of the center of the crystals, and Vector orientation (X,Y,Z), corresponding to the angular orientation of each crystal (see documentation)
(2) A header file containing several informations about the system.
CASToR algorithms will keep a similar crystal indexation as the LUT was written, and load it in RAM
This script uses a GATE model of a General Electric PET system as example
 toolkits/castor-PetScannerLutEx.ccThis program generates a CASToR Look-Up-Table (LUT) containing geometry information related to each crystal of a PET system.
The LUT contains x,y,z cartesian position of the center of each crystals, as well as their transaxial angular orientations.
The LUT files is composed of two files :
(1) A binary file containing for each crystal: Cartesian positions (X,Y,Z) of the center of the crystals, and Vector orientation (X,Y,Z), corresponding to the angular orientation of each crystal (see documentation)
(2) A header file containing several informations about the system.
CASToR algorithms will keep a similar crystal indexation as the LUT was written, and load it in RAM
This script uses a GATE model of a General Electric PET system as example
 castor-proj.ccThis is the main program of the analytic projection tool for CASToR It reads/parses/checks the command-line options provided by the user, initialize each manager classes with the correct set of options, and launch the projection algorithm (managed by oAnalyticProjection)
 code/castor-proj.ccThis is the main program of the analytic projection tool for CASToR It reads/parses/checks the command-line options provided by the user, initialize each manager classes with the correct set of options, and launch the projection algorithm (managed by oAnalyticProjection)
 castor-recon.ccCASToR: Customizable and Advanced Software for Tomographic Reconstruction
This is the main reconstruction program of the CASToR software. It reads/parses/checks the command-line options, initialize each manager classes with the correct set of options, and launch the reconstruction algorithm For list-mode datafiles, if a sensitivity image is not provided using "-sens", it is generated before reconstruction (managed by oSensitivityGenerator)
 code/castor-recon.ccCASToR: Customizable and Advanced Software for Tomographic Reconstruction
This is the main reconstruction program of the CASToR software. It reads/parses/checks the command-line options, initialize each manager classes with the correct set of options, and launch the reconstruction algorithm For list-mode datafiles, if a sensitivity image is not provided using "-sens", it is generated before reconstruction (managed by oSensitivityGenerator)
 code/toolkits/castor-scannerLUTExplorer.ccThis program can be used to visualize a scanner Look-Up-Table (geometric position and orientation of the system crystals/pixels), element by element
 toolkits/castor-scannerLUTExplorer.ccThis program can be used to visualize a scanner Look-Up-Table (geometric position and orientation of the system crystals/pixels), element by element
 code/toolkits/castor-sumImages.ccThis program is used to merge a group of images corresponding to multiple bed positions reconstructed separately
 toolkits/castor-sumImages.ccThis program is used to merge a group of images corresponding to multiple bed positions reconstructed separately
 check_benchmark_ct_histogram.cc
 check_benchmark_gate_pet.cc
 check_benchmark_gate_spect.cc
 check_benchmark_pet_dynamic.cc
 check_benchmark_pet_dynamic_rig-mot.cc
 check_benchmark_pet_histogram.cc
 pipeline_gitlab_pet_listmode_reco/check_benchmark_pet_list-mode.cc
 pipeline_gitlab_pet_listmode_sens/check_benchmark_pet_list-mode.cc
 check_benchmark_pet_list-mode_var-tof_unix.cc
 check_benchmark_spect_histogram.cc
 CMakeCCompilerId.c
 CMakeCXXCompilerId.cpp
 code/include/management/doxygen_mainpage.hh
 include/management/doxygen_mainpage.hh
 feature_tests.c
 feature_tests.cxx
 code/src/management/gDataConversionUtilities.ccImplementation of class gDataConversionUtilities functions
 src/management/gDataConversionUtilities.ccImplementation of class gDataConversionUtilities functions
 code/include/management/gDataConversionUtilities.hhThis file gathers various function dedicated to data conversion in order to convert various type of GATE files (macro file, root datafile) to the CASToR file formats
 include/management/gDataConversionUtilities.hhThis file gathers various function dedicated to data conversion in order to convert various type of GATE files (macro file, root datafile) to the CASToR file formats
 code/src/management/gOptions.ccImplementation of class gOptions functions
 src/management/gOptions.ccImplementation of class gOptions functions
 code/include/management/gOptions.hhThis file is used for all kind of different functions designed for options parsing and ASCII file reading.
All functions included here are not class members
 include/management/gOptions.hhThis file is used for all kind of different functions designed for options parsing and ASCII file reading.
All functions included here are not class members
 code/include/management/gVariables.hhThis header file is mainly used to declare some macro definitions and all includes needed from the standard c library
 include/management/gVariables.hhThis header file is mainly used to declare some macro definitions and all includes needed from the standard c library
 code/src/dynamic/i1TCModel.ccImplementation of class i1TCModel
 src/dynamic/i1TCModel.ccImplementation of class i1TCModel
 code/include/dynamic/i1TCModel.hhDeclaration of class i1TCModel
 include/dynamic/i1TCModel.hhDeclaration of class i1TCModel
 code/src/datafile/iDataFileCT.ccImplementation of class iDataFileCT
 src/datafile/iDataFileCT.ccImplementation of class iDataFileCT
 code/include/datafile/iDataFileCT.hhDeclaration of class iDataFileCT
 include/datafile/iDataFileCT.hhDeclaration of class iDataFileCT
 code/src/datafile/iDataFilePET.ccImplementation of class iDataFilePET
 src/datafile/iDataFilePET.ccImplementation of class iDataFilePET
 code/include/datafile/iDataFilePET.hhDeclaration of class iDataFilePET
 include/datafile/iDataFilePET.hhDeclaration of class iDataFilePET
 code/src/datafile/iDataFileSPECT.ccImplementation of class iDataFileSPECT
 src/datafile/iDataFileSPECT.ccImplementation of class iDataFileSPECT
 code/include/datafile/iDataFileSPECT.hhDeclaration of class iDataFileSPECT
 include/datafile/iDataFileSPECT.hhDeclaration of class iDataFileSPECT
 code/src/image/iDeformationRigid.ccImplementation of class iDeformationRigid
 src/image/iDeformationRigid.ccImplementation of class iDeformationRigid
 code/include/image/iDeformationRigid.hhDeclaration of class iDeformationRigid
 include/image/iDeformationRigid.hhDeclaration of class iDeformationRigid
 code/src/image/iDeformationTemplate.ccImplementation of class iDeformationTemplate
 src/image/iDeformationTemplate.ccImplementation of class iDeformationTemplate
 code/include/image/iDeformationTemplate.hhDeclaration of class iDeformationTemplate
 include/image/iDeformationTemplate.hhDeclaration of class iDeformationTemplate
 code/src/dynamic/iDynamicModelTemplate.ccImplementation of class iDynamicModelTemplate
 src/dynamic/iDynamicModelTemplate.ccImplementation of class iDynamicModelTemplate
 code/include/dynamic/iDynamicModelTemplate.hhDeclaration of class iDynamicModelTemplate
 include/dynamic/iDynamicModelTemplate.hhDeclaration of class iDynamicModelTemplate
 code/src/datafile/iEventCT.ccImplementation of class iEventCT
 src/datafile/iEventCT.ccImplementation of class iEventCT
 code/include/datafile/iEventCT.hhDeclaration of class iEventCT
 include/datafile/iEventCT.hhDeclaration of class iEventCT
 code/src/datafile/iEventHistoCT.ccImplementation of class iEventHistoCT
 src/datafile/iEventHistoCT.ccImplementation of class iEventHistoCT
 code/include/datafile/iEventHistoCT.hhDeclaration of class iEventHistoCT
 include/datafile/iEventHistoCT.hhDeclaration of class iEventHistoCT
 code/src/datafile/iEventHistoPET.ccImplementation of class iEventHistoPET
 src/datafile/iEventHistoPET.ccImplementation of class iEventHistoPET
 code/include/datafile/iEventHistoPET.hhDeclaration of class iEventHistoPET
 include/datafile/iEventHistoPET.hhDeclaration of class iEventHistoPET
 code/src/datafile/iEventHistoSPECT.ccImplementation of class iEventHistoSPECT
 src/datafile/iEventHistoSPECT.ccImplementation of class iEventHistoSPECT
 code/include/datafile/iEventHistoSPECT.hhDeclaration of class iEventHistoSPECT
 include/datafile/iEventHistoSPECT.hhDeclaration of class iEventHistoSPECT
 code/src/datafile/iEventListCT.ccImplementation of class iEventListCT
 src/datafile/iEventListCT.ccImplementation of class iEventListCT
 code/include/datafile/iEventListCT.hhDeclaration of class iEventListCT
 include/datafile/iEventListCT.hhDeclaration of class iEventListCT
 code/src/datafile/iEventListPET.ccImplementation of class iEventListPET
 src/datafile/iEventListPET.ccImplementation of class iEventListPET
 code/include/datafile/iEventListPET.hhDeclaration of class iEventListPET
 include/datafile/iEventListPET.hhDeclaration of class iEventListPET
 code/src/datafile/iEventListSPECT.ccImplementation of class iEventListSPECT
 src/datafile/iEventListSPECT.ccImplementation of class iEventListSPECT
 code/include/datafile/iEventListSPECT.hhDeclaration of class iEventListSPECT
 include/datafile/iEventListSPECT.hhDeclaration of class iEventListSPECT
 code/src/datafile/iEventNorm.ccImplementation of class iEventNorm
 src/datafile/iEventNorm.ccImplementation of class iEventNorm
 code/include/datafile/iEventNorm.hhDeclaration of class iEventNorm
 include/datafile/iEventNorm.hhDeclaration of class iEventNorm
 code/src/datafile/iEventPET.ccImplementation of class iEventPET
 src/datafile/iEventPET.ccImplementation of class iEventPET
 code/include/datafile/iEventPET.hhDeclaration of class iEventPET
 include/datafile/iEventPET.hhDeclaration of class iEventPET
 code/src/datafile/iEventSPECT.ccImplementation of class iEventSPECT
 src/datafile/iEventSPECT.ccImplementation of class iEventSPECT
 code/include/datafile/iEventSPECT.hhDeclaration of class iEventSPECT
 include/datafile/iEventSPECT.hhDeclaration of class iEventSPECT
 code/src/image/iImageConvolverStationaryGaussian.ccImplementation of class iImageConvolverStationaryGaussian
 src/image/iImageConvolverStationaryGaussian.ccImplementation of class iImageConvolverStationaryGaussian
 code/include/image/iImageConvolverStationaryGaussian.hhDeclaration of class iImageConvolverStationaryGaussian
 include/image/iImageConvolverStationaryGaussian.hhDeclaration of class iImageConvolverStationaryGaussian
 code/src/image/iImageConvolverStationaryIsotropicGaussian.ccImplementation of class iImageConvolverStationaryIsotropicGaussian
 src/image/iImageConvolverStationaryIsotropicGaussian.ccImplementation of class iImageConvolverStationaryIsotropicGaussian
 code/include/image/iImageConvolverStationaryIsotropicGaussian.hhDeclaration of class iImageConvolverStationaryIsotropicGaussian
 include/image/iImageConvolverStationaryIsotropicGaussian.hhDeclaration of class iImageConvolverStationaryIsotropicGaussian
 code/src/image/iImageConvolverTemplate.ccImplementation of class iImageConvolverTemplate
 src/image/iImageConvolverTemplate.ccImplementation of class iImageConvolverTemplate
 code/include/image/iImageConvolverTemplate.hhDeclaration of class iImageConvolverTemplate
 include/image/iImageConvolverTemplate.hhDeclaration of class iImageConvolverTemplate
 code/src/image/iImageProcessingTemplate.ccImplementation of class iImageProcessingTemplate
 src/image/iImageProcessingTemplate.ccImplementation of class iImageProcessingTemplate
 code/include/image/iImageProcessingTemplate.hhDeclaration of class iImageProcessingTemplate
 include/image/iImageProcessingTemplate.hhDeclaration of class iImageProcessingTemplate
 code/src/algorithm/iIterativeAlgorithm.ccImplementation of class iIterativeAlgorithm
 src/algorithm/iIterativeAlgorithm.ccImplementation of class iIterativeAlgorithm
 code/include/algorithm/iIterativeAlgorithm.hhDeclaration of class oIterativeAlgorithm
 include/algorithm/iIterativeAlgorithm.hhDeclaration of class oIterativeAlgorithm
 code/src/dynamic/iLinearModel.ccImplementation of class iLinearModel
 src/dynamic/iLinearModel.ccImplementation of class iLinearModel
 code/include/dynamic/iLinearModel.hhDeclaration of class iLinearModel
 include/dynamic/iLinearModel.hhDeclaration of class iLinearModel
 code/src/dynamic/iLinearModelTemplate.ccImplementation of class iLinearModelTemplate
 src/dynamic/iLinearModelTemplate.ccImplementation of class iLinearModelTemplate
 code/include/dynamic/iLinearModelTemplate.hhDeclaration of class iDynamicModelTemplate
 include/dynamic/iLinearModelTemplate.hhDeclaration of class iDynamicModelTemplate
 code/src/dynamic/iLinearPatlakModel.ccImplementation of class iLinearPatlakModel
 src/dynamic/iLinearPatlakModel.ccImplementation of class iLinearPatlakModel
 code/include/dynamic/iLinearPatlakModel.hhDeclaration of class iLinearPatlakModel
 include/dynamic/iLinearPatlakModel.hhDeclaration of class iLinearPatlakModel
 code/src/dynamic/iLinearSpectralModel.ccImplementation of class iDynamicModelTemplate
 src/dynamic/iLinearSpectralModel.ccImplementation of class iDynamicModelTemplate
 code/include/dynamic/iLinearSpectralModel.hhDeclaration of class iLinearSpectralModel
 include/dynamic/iLinearSpectralModel.hhDeclaration of class iLinearSpectralModel
 iOptimizerADMMLim.ccImplementation of class iOptimizerADMMLim
 iOptimizerADMMLim.hhDeclaration of class iOptimizerADMMLim
 iOptimizerAPPGML.ccImplementation of class iOptimizerAPPGML
 iOptimizerAPPGML.hhDeclaration of class iOptimizerAPPGML
 code/src/optimizer/iOptimizerBSREM.ccImplementation of class iOptimizerBSREM
 src/optimizer/iOptimizerBSREM.ccImplementation of class iOptimizerBSREM
 code/include/optimizer/iOptimizerBSREM.hhDeclaration of class iOptimizerBSREM
 include/optimizer/iOptimizerBSREM.hhDeclaration of class iOptimizerBSREM
 code/src/optimizer/iOptimizerLandweber.ccImplementation of class iOptimizerLandweber
 src/optimizer/iOptimizerLandweber.ccImplementation of class iOptimizerLandweber
 code/include/optimizer/iOptimizerLandweber.hhDeclaration of class iOptimizerLandweber
 include/optimizer/iOptimizerLandweber.hhDeclaration of class iOptimizerLandweber
 code/src/optimizer/iOptimizerMLEM.ccImplementation of class iOptimizerMLEM
 src/optimizer/iOptimizerMLEM.ccImplementation of class iOptimizerMLEM
 code/include/optimizer/iOptimizerMLEM.hhDeclaration of class iOptimizerMLEM
 include/optimizer/iOptimizerMLEM.hhDeclaration of class iOptimizerMLEM
 iOptimizerMLMuMap.ccImplementation of class iOptimizerMLMuMap
 iOptimizerMLMuMap.hhDeclaration of class iOptimizerMLMuMap
 code/src/optimizer/iOptimizerMLTR.ccImplementation of class iOptimizerMLTR
 src/optimizer/iOptimizerMLTR.ccImplementation of class iOptimizerMLTR
 code/include/optimizer/iOptimizerMLTR.hhDeclaration of class iOptimizerMLTR
 include/optimizer/iOptimizerMLTR.hhDeclaration of class iOptimizerMLTR
 code/src/optimizer/iOptimizerModifiedEMForMRFPenalizedML.ccImplementation of class iOptimizerModifiedEMForMRFPenalizedML
 src/optimizer/iOptimizerModifiedEMForMRFPenalizedML.ccImplementation of class iOptimizerModifiedEMForMRFPenalizedML
 code/include/optimizer/iOptimizerModifiedEMForMRFPenalizedML.hhDeclaration of class iOptimizerModifiedEMForMRFPenalizedML
 include/optimizer/iOptimizerModifiedEMForMRFPenalizedML.hhDeclaration of class iOptimizerModifiedEMForMRFPenalizedML
 code/src/optimizer/iOptimizerNEGML.ccImplementation of class iOptimizerNEGML
 src/optimizer/iOptimizerNEGML.ccImplementation of class iOptimizerNEGML
 code/include/optimizer/iOptimizerNEGML.hhDeclaration of class iOptimizerNEGML
 include/optimizer/iOptimizerNEGML.hhDeclaration of class iOptimizerNEGML
 code/src/optimizer/iOptimizerOneStepLate.ccImplementation of class iOptimizerOneStepLate
 src/optimizer/iOptimizerOneStepLate.ccImplementation of class iOptimizerOneStepLate
 code/include/optimizer/iOptimizerOneStepLate.hhDeclaration of class iOptimizerOneStepLate
 include/optimizer/iOptimizerOneStepLate.hhDeclaration of class iOptimizerOneStepLate
 code/src/optimizer/iOptimizerOriginalAML.ccImplementation of class iOptimizerOriginalAML
 src/optimizer/iOptimizerOriginalAML.ccImplementation of class iOptimizerOriginalAML
 code/include/optimizer/iOptimizerOriginalAML.hhDeclaration of class iOptimizerOriginalAML
 include/optimizer/iOptimizerOriginalAML.hhDeclaration of class iOptimizerOriginalAML
 code/src/optimizer/iOptimizerPenalizedPreconditionedGradientML.ccImplementation of class iOptimizerPenalizedPreconditionedGradientML
 src/optimizer/iOptimizerPenalizedPreconditionedGradientML.ccImplementation of class iOptimizerPenalizedPreconditionedGradientML
 code/include/optimizer/iOptimizerPenalizedPreconditionedGradientML.hhDeclaration of class iOptimizerPenalizedPreconditionedGradient
 include/optimizer/iOptimizerPenalizedPreconditionedGradientML.hhDeclaration of class iOptimizerPenalizedPreconditionedGradient
 iOptimizerSens.ccImplementation of class iOptimizerSens
 iOptimizerSens.hhDeclaration of class iOptimizerSens
 code/src/optimizer/iOptimizerTemplate.ccImplementation of class iOptimizerTemplate
 src/optimizer/iOptimizerTemplate.ccImplementation of class iOptimizerTemplate
 code/include/optimizer/iOptimizerTemplate.hhDeclaration of class iOptimizerTemplate
 include/optimizer/iOptimizerTemplate.hhDeclaration of class iOptimizerTemplate
 code/src/optimizer/iPenaltyMarkovRandomField.ccImplementation of class iPenaltyMarkovRandomField
 src/optimizer/iPenaltyMarkovRandomField.ccImplementation of class iPenaltyMarkovRandomField
 code/include/optimizer/iPenaltyMarkovRandomField.hhDeclaration of class iPenaltyMarkovRandomField
 include/optimizer/iPenaltyMarkovRandomField.hhDeclaration of class iPenaltyMarkovRandomField
 code/src/optimizer/iPenaltyMedianRootPrior.ccImplementation of class iPenaltyMedianRootPrior
 src/optimizer/iPenaltyMedianRootPrior.ccImplementation of class iPenaltyMedianRootPrior
 code/include/optimizer/iPenaltyMedianRootPrior.hhDeclaration of class iPenaltyMedianRootPrior
 include/optimizer/iPenaltyMedianRootPrior.hhDeclaration of class iPenaltyMedianRootPrior
 iPenaltyQuadratic.ccImplementation of class iPenaltyQuadratic
 iPenaltyQuadratic.hhDeclaration of class iPenaltyQuadratic
 code/src/optimizer/iPenaltyTemplate.ccImplementation of class iPenaltyTemplate
 src/optimizer/iPenaltyTemplate.ccImplementation of class iPenaltyTemplate
 code/include/optimizer/iPenaltyTemplate.hhDeclaration of class iPenaltyTemplate
 include/optimizer/iPenaltyTemplate.hhDeclaration of class iPenaltyTemplate
 code/src/projector/iProjectorClassicSiddon.ccImplementation of class iProjectorClassicSiddon
 src/projector/iProjectorClassicSiddon.ccImplementation of class iProjectorClassicSiddon
 code/include/projector/iProjectorClassicSiddon.hhDeclaration of class iProjectorClassicSiddon
 include/projector/iProjectorClassicSiddon.hhDeclaration of class iProjectorClassicSiddon
 code/src/projector/iProjectorDistanceDriven.ccImplementation of class iProjectorDistanceDriven
 src/projector/iProjectorDistanceDriven.ccImplementation of class iProjectorDistanceDriven
 code/include/projector/iProjectorDistanceDriven.hhDeclaration of class iProjectorDistanceDriven
 include/projector/iProjectorDistanceDriven.hhDeclaration of class iProjectorDistanceDriven
 code/src/projector/iProjectorIncrementalSiddon.ccImplementation of class iProjectorIncrementalSiddon
 src/projector/iProjectorIncrementalSiddon.ccImplementation of class iProjectorIncrementalSiddon
 code/include/projector/iProjectorIncrementalSiddon.hhDeclaration of class iProjectorIncrementalSiddon
 include/projector/iProjectorIncrementalSiddon.hhDeclaration of class iProjectorIncrementalSiddon
 code/src/projector/iProjectorIncrementalSiddonMulti.ccImplementation of class iProjectorIncrementalSiddonMulti
 src/projector/iProjectorIncrementalSiddonMulti.ccImplementation of class iProjectorIncrementalSiddonMulti
 code/include/projector/iProjectorIncrementalSiddonMulti.hhDeclaration of class iProjectorIncrementalSiddonMulti
 include/projector/iProjectorIncrementalSiddonMulti.hhDeclaration of class iProjectorIncrementalSiddonMulti
 code/src/projector/iProjectorJoseph.ccImplementation of class iProjectorJoseph
 src/projector/iProjectorJoseph.ccImplementation of class iProjectorJoseph
 code/include/projector/iProjectorJoseph.hhDeclaration of class iProjectorJoseph
 include/projector/iProjectorJoseph.hhDeclaration of class iProjectorJoseph
 code/src/projector/iProjectorTemplate.ccImplementation of class iProjectorTemplate
 src/projector/iProjectorTemplate.ccImplementation of class iProjectorTemplate
 code/include/projector/iProjectorTemplate.hhDeclaration of class iProjectorTemplate
 include/projector/iProjectorTemplate.hhDeclaration of class iProjectorTemplate
 code/src/algorithm/iRCPGSAlgorithm.cc
 src/algorithm/iRCPGSAlgorithm.cc
 code/include/algorithm/iRCPGSAlgorithm.hh
 include/algorithm/iRCPGSAlgorithm.hh
 code/src/scanner/iScannerCT.ccImplementation of class iScannerCT
 src/scanner/iScannerCT.ccImplementation of class iScannerCT
 code/include/scanner/iScannerCT.hhDeclaration of class iScannerCT
 include/scanner/iScannerCT.hhDeclaration of class iScannerCT
 code/src/scanner/iScannerPET.ccImplementation of class iScannerPET
 src/scanner/iScannerPET.ccImplementation of class iScannerPET
 code/include/scanner/iScannerPET.hhDeclaration of class iScannerPET
 include/scanner/iScannerPET.hhDeclaration of class iScannerPET
 code/src/scanner/iScannerSPECTConv.ccImplementation of class iScannerSPECTConv
 src/scanner/iScannerSPECTConv.ccImplementation of class iScannerSPECTConv
 code/include/scanner/iScannerSPECTConv.hhDeclaration of class iScannerSPECTConv
 include/scanner/iScannerSPECTConv.hhDeclaration of class iScannerSPECTConv
 code/src/analytic_simulator/oAnalyticProjection.ccImplementation of class oAnalyticProjection
 src/analytic_simulator/oAnalyticProjection.ccImplementation of class oAnalyticProjection
 code/include/analytic_simulator/oAnalyticProjection.hhDeclaration of class oAnalyticProjection
 include/analytic_simulator/oAnalyticProjection.hhDeclaration of class oAnalyticProjection
 code/src/dynamic/oArterialInputCurve.ccImplementation of class oArterialInputCurve
 src/dynamic/oArterialInputCurve.ccImplementation of class oArterialInputCurve
 code/include/dynamic/oArterialInputCurve.hhDeclaration of class oArterialInputCurve
 include/dynamic/oArterialInputCurve.hhDeclaration of class oArterialInputCurve
 oCASToRConfig.hh
 code/src/analytic_simulator/oComputeProjection.ccImplementation of class oComputeProjection
 src/analytic_simulator/oComputeProjection.ccImplementation of class oComputeProjection
 code/include/analytic_simulator/oComputeProjection.hhDeclaration of class oComputeProjection
 include/analytic_simulator/oComputeProjection.hhDeclaration of class oComputeProjection
 code/src/image/oDeformationManager.ccImplementation of class oDeformationManager
 src/image/oDeformationManager.ccImplementation of class oDeformationManager
 code/include/image/oDeformationManager.hhDeclaration of class oDeformationManager
 include/image/oDeformationManager.hhDeclaration of class oDeformationManager
 code/include/management/oDirentWin32.hh
 include/management/oDirentWin32.hh
 code/src/datafile/oDynamicDataManager.ccImplementation of class oDynamicDataManager
 src/datafile/oDynamicDataManager.ccImplementation of class oDynamicDataManager
 code/include/datafile/oDynamicDataManager.hhDeclaration of class oDynamicDataManager
 include/datafile/oDynamicDataManager.hhDeclaration of class oDynamicDataManager
 code/src/dynamic/oDynamicModelManager.ccImplementation of class oDynamicModelManager
 src/dynamic/oDynamicModelManager.ccImplementation of class oDynamicModelManager
 code/include/dynamic/oDynamicModelManager.hhDeclaration of class oDynamicModelManager
 include/dynamic/oDynamicModelManager.hhDeclaration of class oDynamicModelManager
 code/src/image/oImageConvolverManager.ccImplementation of class oImageConvolverManager
 src/image/oImageConvolverManager.ccImplementation of class oImageConvolverManager
 code/include/image/oImageConvolverManager.hhDeclaration of class oImageConvolverManager
 include/image/oImageConvolverManager.hhDeclaration of class oImageConvolverManager
 code/src/image/oImageDimensionsAndQuantification.ccImplementation of class oImageDimensionsAndQuantification
 src/image/oImageDimensionsAndQuantification.ccImplementation of class oImageDimensionsAndQuantification
 code/include/image/oImageDimensionsAndQuantification.hhDeclaration of class oImageDimensionsAndQuantification
 include/image/oImageDimensionsAndQuantification.hhDeclaration of class oImageDimensionsAndQuantification
 code/src/image/oImageProcessingManager.ccImplementation of class oImageProcessingManager
 src/image/oImageProcessingManager.ccImplementation of class oImageProcessingManager
 code/include/image/oImageProcessingManager.hhDeclaration of class oImageProcessingManager
 include/image/oImageProcessingManager.hhDeclaration of class oImageProcessingManager
 code/src/image/oImageSpace.ccImplementation of class oImageSpace
 src/image/oImageSpace.ccImplementation of class oImageSpace
 code/include/image/oImageSpace.hhDeclaration of class oImageSpace
 include/image/oImageSpace.hhDeclaration of class oImageSpace
 code/src/image/oInterfileIO.ccImplementation of class Interfile management functions
 src/image/oInterfileIO.ccImplementation of class Interfile management functions
 code/include/image/oInterfileIO.hhThis group of functions manages Interfile image file format
 include/image/oInterfileIO.hhThis group of functions manages Interfile image file format
 code/src/scanner/oMatrix.ccImplementation of class oMatrix
 src/scanner/oMatrix.ccImplementation of class oMatrix
 code/include/scanner/oMatrix.hhDeclaration of class oMatrix
 include/scanner/oMatrix.hhDeclaration of class oMatrix
 code/src/datafile/oMemoryMapped.ccImplementation of file to memory mapping
 src/datafile/oMemoryMapped.ccImplementation of file to memory mapping
 code/include/datafile/oMemoryMapped.hhImplementation of file to memory mapping
 include/datafile/oMemoryMapped.hhImplementation of file to memory mapping
 code/src/optimizer/oOptimizerManager.ccImplementation of class oOptimizerManager
 src/optimizer/oOptimizerManager.ccImplementation of class oOptimizerManager
 code/include/optimizer/oOptimizerManager.hhDeclaration of class oOptimizerManager
 include/optimizer/oOptimizerManager.hhDeclaration of class oOptimizerManager
 OpenMPCheckVersion.c
 OpenMPCheckVersion.cpp
 OpenMPTryFlag.c
 OpenMPTryFlag.cpp
 code/src/projector/oProjectionLine.ccImplementation of class oProjectionLine
 src/projector/oProjectionLine.ccImplementation of class oProjectionLine
 code/include/projector/oProjectionLine.hhDeclaration of class oProjectionLine
 include/projector/oProjectionLine.hhDeclaration of class oProjectionLine
 code/src/projector/oProjectorManager.ccImplementation of class oProjectorManager
 src/projector/oProjectorManager.ccImplementation of class oProjectorManager
 code/include/projector/oProjectorManager.hhDeclaration of class oProjectorManager
 include/projector/oProjectorManager.hhDeclaration of class oProjectorManager
 code/src/algorithm/oSensitivityGenerator.ccImplementation of class oSensitivityGenerator
 src/algorithm/oSensitivityGenerator.ccImplementation of class oSensitivityGenerator
 code/include/algorithm/oSensitivityGenerator.hhDeclaration of class oSensitivityGenerator
 include/algorithm/oSensitivityGenerator.hhDeclaration of class oSensitivityGenerator
 code/src/projector/oSystemMatrix.ccImplementation of class oSystemMatrix
 src/projector/oSystemMatrix.ccImplementation of class oSystemMatrix
 code/include/projector/oSystemMatrix.hhDeclaration of class oSystemMatrix
 include/projector/oSystemMatrix.hhDeclaration of class oSystemMatrix
 code/src/management/sAddonManager.ccImplementation of class sAddonManager
 src/management/sAddonManager.ccImplementation of class sAddonManager
 code/include/management/sAddonManager.hhDeclaration of class sAddonManager
 include/management/sAddonManager.hhDeclaration of class sAddonManager
 code/src/management/sChronoManager.ccImplementation of class sChronoManager
 src/management/sChronoManager.ccImplementation of class sChronoManager
 code/include/management/sChronoManager.hhDeclaration of class sChronoManager
 include/management/sChronoManager.hhDeclaration of class sChronoManager
 code/src/management/sOutputManager.ccImplementation of class sOutputManager
 src/management/sOutputManager.ccImplementation of class sOutputManager
 code/include/management/sOutputManager.hhDeclaration of class sOutputManager
 include/management/sOutputManager.hhDeclaration of class sOutputManager
 code/src/management/sRandomNumberGenerator.ccImplementation of class sRandomNumberGenerator
 src/management/sRandomNumberGenerator.ccImplementation of class sRandomNumberGenerator
 code/include/management/sRandomNumberGenerator.hhDeclaration of class sRandomNumberGenerator
 include/management/sRandomNumberGenerator.hhDeclaration of class sRandomNumberGenerator
 code/src/scanner/sScannerManager.ccImplementation of class sScannerManager
 src/scanner/sScannerManager.ccImplementation of class sScannerManager
 code/include/scanner/sScannerManager.hhDeclaration of class sScannerManager
 include/scanner/sScannerManager.hhDeclaration of class sScannerManager
 code/src/algorithm/vAlgorithm.ccImplementation of class vAlgorithm
 src/algorithm/vAlgorithm.ccImplementation of class vAlgorithm
 code/include/algorithm/vAlgorithm.hhDeclaration of class vAlgorithm
 include/algorithm/vAlgorithm.hhDeclaration of class vAlgorithm
 code/src/datafile/vDataFile.ccImplementation of class vDataFile
 src/datafile/vDataFile.ccImplementation of class vDataFile
 code/include/datafile/vDataFile.hhDeclaration of class vDataFile
 include/datafile/vDataFile.hhDeclaration of class vDataFile
 code/src/image/vDeformation.ccImplementation of class vDeformation
 src/image/vDeformation.ccImplementation of class vDeformation
 code/include/image/vDeformation.hhDeclaration of class vDeformation
 include/image/vDeformation.hhDeclaration of class vDeformation
 code/src/dynamic/vDynamicModel.ccImplementation of class vDynamicModel
 src/dynamic/vDynamicModel.ccImplementation of class vDynamicModel
 code/include/dynamic/vDynamicModel.hhDeclaration of class vDynamicModel
 include/dynamic/vDynamicModel.hhDeclaration of class vDynamicModel
 code/src/datafile/vEvent.ccImplementation of class vEvent
 src/datafile/vEvent.ccImplementation of class vEvent
 code/include/datafile/vEvent.hhDeclaration of class vEvent
 include/datafile/vEvent.hhDeclaration of class vEvent
 code/src/image/vImageConvolver.ccImplementation of class vImageConvolver
 src/image/vImageConvolver.ccImplementation of class vImageConvolver
 code/include/image/vImageConvolver.hhDeclaration of class vImageConvolver
 include/image/vImageConvolver.hhDeclaration of class vImageConvolver
 code/src/image/vImageProcessingModule.ccImplementation of class vImageProcessingModule
 src/image/vImageProcessingModule.ccImplementation of class vImageProcessingModule
 code/include/image/vImageProcessingModule.hhDeclaration of class vImageProcessingModule
 include/image/vImageProcessingModule.hhDeclaration of class vImageProcessingModule
 code/src/optimizer/vOptimizer.ccImplementation of class vOptimizer
 src/optimizer/vOptimizer.ccImplementation of class vOptimizer
 code/include/optimizer/vOptimizer.hhDeclaration of class vOptimizer
 include/optimizer/vOptimizer.hhDeclaration of class vOptimizer
 code/src/optimizer/vPenalty.ccImplementation of class vPenalty
 src/optimizer/vPenalty.ccImplementation of class vPenalty
 code/include/optimizer/vPenalty.hhDeclaration of class vPenalty
 include/optimizer/vPenalty.hhDeclaration of class vPenalty
 code/src/projector/vProjector.ccImplementation of class vProjector
 src/projector/vProjector.ccImplementation of class vProjector
 code/include/projector/vProjector.hhDeclaration of class vProjector
 include/projector/vProjector.hhDeclaration of class vProjector
 code/src/scanner/vScanner.ccImplementation of class vScanner
 src/scanner/vScanner.ccImplementation of class vScanner
 code/include/scanner/vScanner.hhDeclaration of class vScanner
 include/scanner/vScanner.hhDeclaration of class vScanner