This class is designed to be a mother virtual class for DataFile. More...

#include <vDataFile.hh>

Inheritance diagram for vDataFile:

Collaboration diagram for vDataFile:

Public Member Functions
	vDataFile ()
	vDataFile constructor. More...

virtual	~vDataFile ()
	vDataFile destructor. More...

int	ReadInfoInHeader (bool a_affectQuantificationFlag=true)

int	SetParametersFrom (vDataFile *ap_DataFile)

int	CheckParameters ()
	Check the initialization of member variables Call the CheckSpecificParameters() function implemented in child classes. More...

int	InitializeMappedFile ()
	Check the datafile existency, map it to memory and get the raw char* pointer. . More...

virtual int	ComputeSizeEvent ()=0
	This function is implemented in child classes Computation of the size of each event according to the mandatory/optional correction fields. More...

virtual int	PrepareDataFile ()=0
	This function is implemented in child classes Store different kind of information inside arrays (data relative to specific correction as well as basic raw data for the case data is loaded in RAM) Use the flag provided by the user to determine how the data has to be sorted (preloaded or read on the fly) More...

int	OpenFileForWriting (string a_suffix="")

int	CloseFile ()
	Close as many binary file stream for writing. More...

virtual int	WriteHeader ()=0
	This function is implemented in child classes. Generate a header file according to the data output information. More...

virtual int	WriteEvent (vEvent *ap_Event, int a_th=0)=0

vEvent *	GetEvent (int64_t a_eventIndex, int a_th=0)

virtual vEvent *	GetEventSpecific (char *ap_buffer, int a_th)=0

void	GetEventIndexStartAndStop (int64_t ap_indexStart, int64_t ap_indexStop, int a_subsetNum=0, int a_NbSubsets=1)

int	CheckConsistencyWithAnotherBedDataFile (vDataFile *ap_DataFile)

void	Describe ()
	A function used to describe the generic parts of the datafile. More...

virtual void	DescribeSpecific ()=0
	A pure virtual function used to describe the specific parts of the datafile. More...

virtual int	PROJ_InitFile ()=0
	This function is implemented in child classes Initialize the fstream objets for output writing as well as some other variables specific to the Projection script. More...

virtual int	PROJ_GetScannerSpecificParameters ()=0
	This function is implemented in child classes It is used to set several variables of the datafile when using the projection script. Get modality specific parameters from the scanner object, through the scannerManager. More...

int	PROJ_WriteData ()
	Write/Merge chunk of data in a general data file. More...

int	PROJ_DeleteTmpDataFile ()
	Delete temporary datafile used for multithreaded output writing if needed. More...

vEvent *	PROJ_GenerateEvent (int idx_elt1, int idx_elt2, int a_th)

int	GetBedIndex ()

int	GetDataMode ()

string	GetDataModeToString ()

int	GetDataType ()

string	GetDataTypeToString ()

int	GetDataSpec ()

string	GetDataSpecToString ()

int64_t	GetSize ()

int64_t	GetEventSize ()

string	GetHeaderDataFileName ()

string	GetDataFileName ()

FLTNB	GetStartTime ()

FLTNB	GetDuration ()

FLTNB	GetCalibrationFactor ()

FLTNB *	GetPOIResolution ()

bool *	GetPOIDirectionFlag ()

bool	GetPOIInfoFlag ()

bool	GetIgnorePOIFlag ()

virtual int	GetMaxRingDiff ()
	Return an error by default. This function is surcharged by the PET (and CT) scanner daughter class. More...

void	SetDataMode (int a_dataMode)

void	SetDataType (int a_dataType)

void	SetBedIndex (int a_bedIndex)

bool	GetBedPositionFlag ()

FLTNB	GetRelativeBedPosition ()

void	SetVerbose (int a_verboseLevel)

int	GetVerbose ()
	Get the verbose level. More...

void	SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)

void	SetPOIResolution (FLTNB ap_value[3])

void	SetIgnorePOIFlag (bool a_ignorePOIFlag)

void	SetHeaderDataFileName (const string &a_headerFileName)

void	SetBinaryDataFileName (const string &a_dataFileName)

void	SetCalibrationFactor (FLTNB a_value)

void	SetNbEvents (int64_t a_value)

void	SetStartTime (FLTNB a_value)

void	SetDuration (FLTNB a_value)

string	GetScannerName ()

virtual int	Shuffle (int64_t)
	!!!\ This function has been modified to be used specifically with a More...

	vDataFile ()
	vDataFile constructor. More...

virtual	~vDataFile ()
	vDataFile destructor. More...

int	ReadInfoInHeader (bool a_affectQuantificationFlag=true)

int	SetParametersFrom (vDataFile *ap_DataFile)

int	CheckParameters ()

int	InitializeMappedFile ()

int	InitializeAdditionalData (const string &a_pathToAdditionalData)
	Memory allocation and initialization for the additional data matrices. More...

FLTNB *	GetNewAdditionalDataMatrix (INTNB a_nbDataPerEvent)
	Allocate the memory for this additional data matrix and return the pointer to the matrix. More...

virtual int	ComputeSizeEvent ()=0

virtual int	PrepareDataFile ()=0

int	OpenFileForWriting (string a_suffix="")

int	CloseFile ()

virtual int	WriteHeader ()=0

virtual int	WriteEvent (vEvent *ap_Event, int a_th=0)=0

vEvent *	GetEvent (int64_t a_eventIndex, int a_th=0)

virtual vEvent *	GetEventSpecific (char *ap_buffer, int a_th)=0

void	GetEventIndexStartAndStop (int64_t ap_indexStart, int64_t ap_indexStop, int a_subsetNum=0, int a_NbSubsets=1)

int	CheckConsistencyWithAnotherBedDataFile (vDataFile *ap_DataFile)

void	Describe ()

virtual void	DescribeSpecific ()=0

virtual int	PROJ_InitFile ()=0

virtual int	PROJ_GetScannerSpecificParameters ()=0

int	PROJ_WriteData ()

int	PROJ_DeleteTmpDataFile ()

vEvent *	PROJ_GenerateEvent (int idx_elt1, int idx_elt2, int a_th)

int	GetBedIndex ()

int	GetDataMode ()

string	GetDataModeToString ()

int	GetDataType ()

string	GetDataTypeToString ()

int	GetDataSpec ()

string	GetDataSpecToString ()

int64_t	GetSize ()

int64_t	GetEventSize ()

string	GetHeaderDataFileName ()

string	GetDataFileName ()

FLTNB	GetStartTime ()

FLTNB	GetDuration ()

FLTNB	GetCalibrationFactor ()

FLTNB *	GetPOIResolution ()

bool *	GetPOIDirectionFlag ()

bool	GetPOIInfoFlag ()

bool	GetIgnorePOIFlag ()

virtual int	GetMaxRingDiff ()

void	SetDataMode (int a_dataMode)

void	SetDataType (int a_dataType)

void	SetBedIndex (int a_bedIndex)

bool	GetBedPositionFlag ()

FLTNB	GetRelativeBedPosition ()

void	SetVerbose (int a_verboseLevel)

int	GetVerbose ()

void	SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)

void	SetPOIResolution (FLTNB ap_value[3])

void	SetIgnorePOIFlag (bool a_ignorePOIFlag)

void	SetHeaderDataFileName (const string &a_headerFileName)

void	SetBinaryDataFileName (const string &a_dataFileName)

void	SetCalibrationFactor (FLTNB a_value)

int64_t	GetNbEvents ()
	Get the total number of events in the datafile. More...

void	SetNbEvents (int64_t a_value)

void	SetStartTime (FLTNB a_value)

void	SetDuration (FLTNB a_value)

string	GetScannerName ()

int	GetNbAdditionalData ()
	Get the number of additional data. More...

virtual int	Shuffle (int64_t)

Public Attributes
FLTNB **	m2p_additionalData

Protected Attributes
oImageDimensionsAndQuantification *	mp_ID

int	m_verbose

string	m_headerFileName

string	m_dataFileName

int64_t	m_nbEvents

int	m_dataMode

int	m_dataType

int	m_dataSpec

FLTNB	m_startTimeInSec

FLTNB	m_durationInSec

FLTNB	m_calibrationFactor

int	m_bedIndex

FLTNB	m_relativeBedPosition

bool	m_bedPositionFlag

string	m_scannerName

bool	m_POIInfoFlag

bool	m_ignorePOIFlag

bool	mp_POIDirectionFlag [3]

FLTNB	mp_POIResolution [3]

int64_t	m_sizeEvent

fstream **	m2p_dataFile

vEvent **	m2p_BufferEvent

int64_t	m_mpi1stEvent

int64_t	m_mpiLastEvent

int64_t	m_mpiNbEvents

oMemoryMapped *	mp_MappedFile

char *	mp_mappedMemory

int	m_nbAdditionalData

INTNB *	mp_additionalDataSize

bool	m_loadedAdditional

int	m_nbCustomINTData

int	m_nbCustomFLTData

Private Member Functions
virtual int	SetSpecificParametersFrom (vDataFile *ap_DataFile)=0

virtual int	CheckSpecificParameters ()=0
	This function is implemented in child classes Check specific parameters of child classes. More...

virtual int	CheckFileSizeConsistency ()=0

virtual int	ReadSpecificInfoInHeader (bool a_affectQuantificationFlag=true)=0

virtual int	CheckSpecificConsistencyWithAnotherDataFile (vDataFile *ap_DataFile)=0

virtual int	SetSpecificParametersFrom (vDataFile *ap_DataFile)=0

virtual int	CheckSpecificParameters ()=0

virtual int	CheckFileSizeConsistency ()=0

virtual int	ReadSpecificInfoInHeader (bool a_affectQuantificationFlag=true)=0

virtual int	CheckSpecificConsistencyWithAnotherDataFile (vDataFile *ap_DataFile)=0

Detailed Description

This class is designed to be a mother virtual class for DataFile.

This class manages the reading of the generic input file (header + data).
It uses some events as buffers to get data informations during run-time.

Definition at line 80 of file code/include/datafile/vDataFile.hh.

Constructor & Destructor Documentation

◆ vDataFile() [1/2]

vDataFile::vDataFile ( )

vDataFile constructor.

Initialize the member variables to their default values.

Definition at line 16 of file code/src/datafile/vDataFile.cc.

◆ ~vDataFile() [1/2]

vDataFile::~vDataFile ( )

virtual

vDataFile destructor.

Definition at line 62 of file code/src/datafile/vDataFile.cc.

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◆ vDataFile() [2/2]

vDataFile::vDataFile ( )

vDataFile constructor.

Initialize the member variables to their default values.

◆ ~vDataFile() [2/2]

virtual vDataFile::~vDataFile ( )

virtual

vDataFile destructor.

Member Function Documentation

◆ CheckConsistencyWithAnotherBedDataFile() [1/2]

int vDataFile::CheckConsistencyWithAnotherBedDataFile ( vDataFile * ap_DataFile )

Definition at line 371 of file code/src/datafile/vDataFile.cc.

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◆ CheckConsistencyWithAnotherBedDataFile() [2/2]

int vDataFile::CheckConsistencyWithAnotherBedDataFile ( vDataFile * ap_DataFile )

◆ CheckFileSizeConsistency() [1/2]

virtual int vDataFile::CheckFileSizeConsistency ( )

privatepure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

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◆ CheckFileSizeConsistency() [2/2]

virtual int vDataFile::CheckFileSizeConsistency ( )

privatepure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

◆ CheckParameters() [1/2]

int vDataFile::CheckParameters ( )

Check the initialization of member variables
Call the CheckSpecificParameters() function implemented in child classes.

Returns: 0 if success, and positive value otherwise.

Definition at line 300 of file code/src/datafile/vDataFile.cc.

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◆ CheckParameters() [2/2]

int vDataFile::CheckParameters ( )

◆ CheckSpecificConsistencyWithAnotherDataFile() [1/2]

virtual int vDataFile::CheckSpecificConsistencyWithAnotherDataFile ( vDataFile * ap_DataFile )

privatepure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

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◆ CheckSpecificConsistencyWithAnotherDataFile() [2/2]

virtual int vDataFile::CheckSpecificConsistencyWithAnotherDataFile ( vDataFile * ap_DataFile )

privatepure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

◆ CheckSpecificParameters() [1/2]

int vDataFile::CheckSpecificParameters ( )

privatepure virtual

This function is implemented in child classes
Check specific parameters of child classes.

Returns: 0 if success, and positive value otherwise.

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

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◆ CheckSpecificParameters() [2/2]

virtual int vDataFile::CheckSpecificParameters ( )

privatepure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

◆ CloseFile() [1/2]

int vDataFile::CloseFile ( )

Close as many binary file stream for writing.

Use the m2p_dataFile for that purpose, see OpenFileForWriting() function

Returns: 0 upon success, another value otherwise

Definition at line 563 of file code/src/datafile/vDataFile.cc.

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◆ CloseFile() [2/2]

int vDataFile::CloseFile ( )

◆ ComputeSizeEvent() [1/2]

vDataFile::ComputeSizeEvent ( )

pure virtual

This function is implemented in child classes
Computation of the size of each event according to the mandatory/optional correction fields.

Returns: 0 is success, positive value otherwise

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

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◆ ComputeSizeEvent() [2/2]

virtual int vDataFile::ComputeSizeEvent ( )

pure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

◆ Describe() [1/2]

void vDataFile::Describe ( )

A function used to describe the generic parts of the datafile.

Definition at line 495 of file code/src/datafile/vDataFile.cc.

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◆ Describe() [2/2]

void vDataFile::Describe ( )

◆ DescribeSpecific() [1/2]

vDataFile::DescribeSpecific ( )

pure virtual

A pure virtual function used to describe the specific parts of the datafile.

Implemented in iDataFileSPECT, iDataFileSPECT, iDataFileCT, iDataFileCT, iDataFilePET, and iDataFilePET.

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◆ DescribeSpecific() [2/2]

virtual void vDataFile::DescribeSpecific ( )

pure virtual

Implemented in iDataFileSPECT, iDataFileSPECT, iDataFileCT, iDataFileCT, iDataFilePET, and iDataFilePET.

◆ GetBedIndex() [1/2]

int vDataFile::GetBedIndex ( )

inline

Returns: its bed index

Definition at line 271 of file code/include/datafile/vDataFile.hh.

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◆ GetBedIndex() [2/2]

int vDataFile::GetBedIndex ( )

inline

Definition at line 288 of file include/datafile/vDataFile.hh.

◆ GetBedPositionFlag() [1/2]

bool vDataFile::GetBedPositionFlag ( )

inline

Returns: The m_bedPositionFlag

Definition at line 403 of file code/include/datafile/vDataFile.hh.

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◆ GetBedPositionFlag() [2/2]

bool vDataFile::GetBedPositionFlag ( )

inline

Definition at line 420 of file include/datafile/vDataFile.hh.

◆ GetCalibrationFactor() [1/2]

FLTNB vDataFile::GetCalibrationFactor ( )

inline

Returns: calibration factor

Definition at line 345 of file code/include/datafile/vDataFile.hh.

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◆ GetCalibrationFactor() [2/2]

FLTNB vDataFile::GetCalibrationFactor ( )

inline

Definition at line 362 of file include/datafile/vDataFile.hh.

◆ GetDataFileName() [1/2]

string vDataFile::GetDataFileName ( )

inline

Returns: datafile name

Definition at line 327 of file code/include/datafile/vDataFile.hh.

◆ GetDataFileName() [2/2]

string vDataFile::GetDataFileName ( )

inline

Definition at line 344 of file include/datafile/vDataFile.hh.

◆ GetDataMode() [1/2]

int vDataFile::GetDataMode ( )

inline

Returns: data mode

Definition at line 277 of file code/include/datafile/vDataFile.hh.

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◆ GetDataMode() [2/2]

int vDataFile::GetDataMode ( )

inline

Definition at line 294 of file include/datafile/vDataFile.hh.

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◆ GetDataModeToString() [1/2]

string vDataFile::GetDataModeToString ( )

Returns: The data mode as a human-readable string

Definition at line 841 of file code/src/datafile/vDataFile.cc.

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◆ GetDataModeToString() [2/2]

string vDataFile::GetDataModeToString ( )

◆ GetDataSpec() [1/2]

int vDataFile::GetDataSpec ( )

inline

Returns: data spec

Definition at line 299 of file code/include/datafile/vDataFile.hh.

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◆ GetDataSpec() [2/2]

int vDataFile::GetDataSpec ( )

inline

Definition at line 316 of file include/datafile/vDataFile.hh.

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◆ GetDataSpecToString() [1/2]

string vDataFile::GetDataSpecToString ( )

Returns: The data spec as a human-readable string

Definition at line 857 of file code/src/datafile/vDataFile.cc.

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◆ GetDataSpecToString() [2/2]

string vDataFile::GetDataSpecToString ( )

◆ GetDataType() [1/2]

int vDataFile::GetDataType ( )

inline

Returns: data type

Definition at line 288 of file code/include/datafile/vDataFile.hh.

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◆ GetDataType() [2/2]

int vDataFile::GetDataType ( )

inline

Definition at line 305 of file include/datafile/vDataFile.hh.

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◆ GetDataTypeToString() [1/2]

string vDataFile::GetDataTypeToString ( )

Returns: The data type as a human-readable string

Definition at line 825 of file code/src/datafile/vDataFile.cc.

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◆ GetDataTypeToString() [2/2]

string vDataFile::GetDataTypeToString ( )

◆ GetDuration() [1/2]

FLTNB vDataFile::GetDuration ( )

inline

Returns: FLTNB corresponding to the acquisition duration (s)

Definition at line 339 of file code/include/datafile/vDataFile.hh.

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◆ GetDuration() [2/2]

FLTNB vDataFile::GetDuration ( )

inline

Definition at line 356 of file include/datafile/vDataFile.hh.

◆ GetEvent() [1/2]

vEvent * vDataFile::GetEvent	(	int64_t	a_eventIndex,
		int	a_th = `0`
	)

Definition at line 583 of file code/src/datafile/vDataFile.cc.

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◆ GetEvent() [2/2]

vEvent* vDataFile::GetEvent	(	int64_t	a_eventIndex,
		int	a_th = `0`
	)

◆ GetEventIndexStartAndStop() [1/2]

void vDataFile::GetEventIndexStartAndStop	(	int64_t *	ap_indexStart,
		int64_t *	ap_indexStop,
		int	a_subsetNum = `0`,
		int	a_NbSubsets = `1`
	)

Definition at line 656 of file code/src/datafile/vDataFile.cc.

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◆ GetEventIndexStartAndStop() [2/2]

void vDataFile::GetEventIndexStartAndStop	(	int64_t *	ap_indexStart,
		int64_t *	ap_indexStop,
		int	a_subsetNum = `0`,
		int	a_NbSubsets = `1`
	)

◆ GetEventSize() [1/2]

int64_t vDataFile::GetEventSize ( )

inline

Definition at line 316 of file code/include/datafile/vDataFile.hh.

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◆ GetEventSize() [2/2]

int64_t vDataFile::GetEventSize ( )

inline

Definition at line 333 of file include/datafile/vDataFile.hh.

◆ GetEventSpecific() [1/2]

virtual vEvent* vDataFile::GetEventSpecific	(	char *	ap_buffer,
		int	a_th
	)

pure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

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◆ GetEventSpecific() [2/2]

virtual vEvent* vDataFile::GetEventSpecific	(	char *	ap_buffer,
		int	a_th
	)

pure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

◆ GetHeaderDataFileName() [1/2]

string vDataFile::GetHeaderDataFileName ( )

inline

Returns: headerdatafile name

Definition at line 321 of file code/include/datafile/vDataFile.hh.

◆ GetHeaderDataFileName() [2/2]

string vDataFile::GetHeaderDataFileName ( )

inline

Definition at line 338 of file include/datafile/vDataFile.hh.

◆ GetIgnorePOIFlag() [1/2]

bool vDataFile::GetIgnorePOIFlag ( )

inline

Returns: m_ignorePOIFlag

Definition at line 369 of file code/include/datafile/vDataFile.hh.

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◆ GetIgnorePOIFlag() [2/2]

bool vDataFile::GetIgnorePOIFlag ( )

inline

Definition at line 386 of file include/datafile/vDataFile.hh.

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◆ GetMaxRingDiff() [1/2]

int vDataFile::GetMaxRingDiff ( )

virtual

Return an error by default.
This function is surcharged by the PET (and CT) scanner daughter class.

Returns: -1 (error) if not surcharged by a daughter class

Definition at line 687 of file code/src/datafile/vDataFile.cc.

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◆ GetMaxRingDiff() [2/2]

virtual int vDataFile::GetMaxRingDiff ( )

virtual

◆ GetNbAdditionalData()

public inline int vDataFile::GetNbAdditionalData ( )

inline

Get the number of additional data.

Returns: m_nbAdditionalData

Definition at line 530 of file include/datafile/vDataFile.hh.

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◆ GetNbEvents()

public inline int64_t vDataFile::GetNbEvents ( )

inline

Get the total number of events in the datafile.

Returns: m_nbEvents

Definition at line 493 of file include/datafile/vDataFile.hh.

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◆ GetNewAdditionalDataMatrix()

FLTNB * vDataFile::GetNewAdditionalDataMatrix ( INTNB a_nbDataPerEvent )

Allocate the memory for this additional data matrix and return the pointer to the matrix.

Parameters

a_nbDataPerEvent the number of data per event

The size of the matrix will be equal to the number of events multiplied by the input parameter

Returns: The pointer to the additional data matrix

Definition at line 374 of file src/datafile/vDataFile.cc.

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◆ GetPOIDirectionFlag() [1/2]

bool * vDataFile::GetPOIDirectionFlag ( )

inline

Returns: pointer to the array containing POI (position of interaction) direction flags

Definition at line 357 of file code/include/datafile/vDataFile.hh.

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◆ GetPOIDirectionFlag() [2/2]

bool* vDataFile::GetPOIDirectionFlag ( )

inline

Definition at line 374 of file include/datafile/vDataFile.hh.

◆ GetPOIInfoFlag() [1/2]

bool vDataFile::GetPOIInfoFlag ( )

inline

Returns: m_POIInfoFlag

Definition at line 363 of file code/include/datafile/vDataFile.hh.

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◆ GetPOIInfoFlag() [2/2]

bool vDataFile::GetPOIInfoFlag ( )

inline

Definition at line 380 of file include/datafile/vDataFile.hh.

◆ GetPOIResolution() [1/2]

FLTNB * vDataFile::GetPOIResolution ( )

inline

Returns: pointer to the array containing POI (position of interaction) resolution

Definition at line 351 of file code/include/datafile/vDataFile.hh.

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◆ GetPOIResolution() [2/2]

FLTNB* vDataFile::GetPOIResolution ( )

inline

Definition at line 368 of file include/datafile/vDataFile.hh.

◆ GetRelativeBedPosition() [1/2]

FLTNB vDataFile::GetRelativeBedPosition ( )

inline

Returns: The m_relativeBedPositionInMm

Definition at line 409 of file code/include/datafile/vDataFile.hh.

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◆ GetRelativeBedPosition() [2/2]

FLTNB vDataFile::GetRelativeBedPosition ( )

inline

Definition at line 426 of file include/datafile/vDataFile.hh.

◆ GetScannerName() [1/2]

string vDataFile::GetScannerName ( )

inline

Returns: the scanner name

Definition at line 499 of file code/include/datafile/vDataFile.hh.

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◆ GetScannerName() [2/2]

string vDataFile::GetScannerName ( )

inline

Definition at line 523 of file include/datafile/vDataFile.hh.

◆ GetSize() [1/2]

int64_t vDataFile::GetSize ( )

inline

Returns: number of events in the datafile

Definition at line 310 of file code/include/datafile/vDataFile.hh.

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◆ GetSize() [2/2]

int64_t vDataFile::GetSize ( )

inline

Definition at line 327 of file include/datafile/vDataFile.hh.

◆ GetStartTime() [1/2]

FLTNB vDataFile::GetStartTime ( )

inline

Returns: FLTNB corresponding to the acquisition start time (s)

Definition at line 333 of file code/include/datafile/vDataFile.hh.

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◆ GetStartTime() [2/2]

FLTNB vDataFile::GetStartTime ( )

inline

Definition at line 350 of file include/datafile/vDataFile.hh.

◆ GetVerbose() [1/2]

int vDataFile::GetVerbose ( )

inline

Get the verbose level.

Returns: m_verbose

Definition at line 423 of file code/include/datafile/vDataFile.hh.

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◆ GetVerbose() [2/2]

int vDataFile::GetVerbose ( )

inline

Definition at line 440 of file include/datafile/vDataFile.hh.

◆ InitializeAdditionalData()

int vDataFile::InitializeAdditionalData ( const string & a_pathToAdditionalData )

Memory allocation and initialization for the additional data matrices.

Parameters

a_pathToAdditionalData path to additional data, multiple files are separated by commas

Nothing is performed if the path provided in parameter is empty; the data is directly read

Returns: 0 if success, positive value otherwise

Definition at line 289 of file src/datafile/vDataFile.cc.

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◆ InitializeMappedFile() [1/2]

int vDataFile::InitializeMappedFile ( )

Check the datafile existency, map it to memory and get the raw char* pointer.
.

Returns: 0 if success, and positive value otherwise.

Definition at line 447 of file code/src/datafile/vDataFile.cc.

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◆ InitializeMappedFile() [2/2]

int vDataFile::InitializeMappedFile ( )

◆ OpenFileForWriting() [1/2]

int vDataFile::OpenFileForWriting ( string a_suffix = "" )

Definition at line 522 of file code/src/datafile/vDataFile.cc.

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◆ OpenFileForWriting() [2/2]

int vDataFile::OpenFileForWriting ( string a_suffix = "" )

◆ PrepareDataFile() [1/2]

vDataFile::PrepareDataFile ( )

pure virtual

This function is implemented in child classes
Store different kind of information inside arrays (data relative to specific correction as well as basic raw data for the case data is loaded in RAM)
Use the flag provided by the user to determine how the data has to be sorted (preloaded or read on the fly)

Returns: 0 is success, positive value otherwise

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

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◆ PrepareDataFile() [2/2]

virtual int vDataFile::PrepareDataFile ( )

pure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

◆ PROJ_DeleteTmpDataFile() [1/2]

int vDataFile::PROJ_DeleteTmpDataFile ( )

Delete temporary datafile used for multithreaded output writing if needed.

Returns: 0 if success, and positive value otherwise.; 0 if success, and positive value otherwise.

Definition at line 771 of file code/src/datafile/vDataFile.cc.

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◆ PROJ_DeleteTmpDataFile() [2/2]

int vDataFile::PROJ_DeleteTmpDataFile ( )

◆ PROJ_GenerateEvent() [1/2]

vEvent * vDataFile::PROJ_GenerateEvent	(	int	idx_elt1,
		int	idx_elt2,
		int	a_th
	)

Definition at line 809 of file code/src/datafile/vDataFile.cc.

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◆ PROJ_GenerateEvent() [2/2]

vEvent* vDataFile::PROJ_GenerateEvent	(	int	idx_elt1,
		int	idx_elt2,
		int	a_th
	)

◆ PROJ_GetScannerSpecificParameters() [1/2]

vDataFile::PROJ_GetScannerSpecificParameters ( )

pure virtual

This function is implemented in child classes
It is used to set several variables of the datafile when using the projection script.
Get modality specific parameters from the scanner object, through the scannerManager.

Returns: 0 if success, positive value otherwise

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

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◆ PROJ_GetScannerSpecificParameters() [2/2]

virtual int vDataFile::PROJ_GetScannerSpecificParameters ( )

pure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

◆ PROJ_InitFile() [1/2]

vDataFile::PROJ_InitFile ( )

pure virtual

This function is implemented in child classes
Initialize the fstream objets for output writing as well as some other variables specific to the Projection script.

Returns: 0 if success, and positive value otherwise.

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

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◆ PROJ_InitFile() [2/2]

virtual int vDataFile::PROJ_InitFile ( )

pure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

◆ PROJ_WriteData() [1/2]

int vDataFile::PROJ_WriteData ( )

Write/Merge chunk of data in a general data file.

Returns: 0 if success, and positive value otherwise.; 0 if success, and positive value otherwise.

Definition at line 700 of file code/src/datafile/vDataFile.cc.

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◆ PROJ_WriteData() [2/2]

int vDataFile::PROJ_WriteData ( )

◆ ReadInfoInHeader() [1/2]

int vDataFile::ReadInfoInHeader ( bool a_affectQuantificationFlag = true )

Definition at line 87 of file code/src/datafile/vDataFile.cc.

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◆ ReadInfoInHeader() [2/2]

int vDataFile::ReadInfoInHeader ( bool a_affectQuantificationFlag = true )

◆ ReadSpecificInfoInHeader() [1/2]

virtual int vDataFile::ReadSpecificInfoInHeader ( bool a_affectQuantificationFlag = true )

privatepure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

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◆ ReadSpecificInfoInHeader() [2/2]

virtual int vDataFile::ReadSpecificInfoInHeader ( bool a_affectQuantificationFlag = true )

privatepure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

◆ SetBedIndex() [1/2]

void vDataFile::SetBedIndex ( int a_bedIndex )

inline

Definition at line 397 of file code/include/datafile/vDataFile.hh.

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◆ SetBedIndex() [2/2]

void vDataFile::SetBedIndex ( int a_bedIndex )

inline

Definition at line 414 of file include/datafile/vDataFile.hh.

◆ SetBinaryDataFileName() [1/2]

void vDataFile::SetBinaryDataFileName ( const string & a_dataFileName )

inline

Definition at line 461 of file code/include/datafile/vDataFile.hh.

◆ SetBinaryDataFileName() [2/2]

void vDataFile::SetBinaryDataFileName ( const string & a_dataFileName )

inline

Definition at line 478 of file include/datafile/vDataFile.hh.

◆ SetCalibrationFactor() [1/2]

void vDataFile::SetCalibrationFactor ( FLTNB a_value )

inline

Definition at line 469 of file code/include/datafile/vDataFile.hh.

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◆ SetCalibrationFactor() [2/2]

void vDataFile::SetCalibrationFactor ( FLTNB a_value )

inline

Definition at line 486 of file include/datafile/vDataFile.hh.

◆ SetDataMode() [1/2]

void vDataFile::SetDataMode ( int a_dataMode )

inline

Definition at line 383 of file code/include/datafile/vDataFile.hh.

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◆ SetDataMode() [2/2]

void vDataFile::SetDataMode ( int a_dataMode )

inline

Definition at line 400 of file include/datafile/vDataFile.hh.

◆ SetDataType() [1/2]

void vDataFile::SetDataType ( int a_dataType )

inline

Definition at line 390 of file code/include/datafile/vDataFile.hh.

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◆ SetDataType() [2/2]

void vDataFile::SetDataType ( int a_dataType )

inline

Definition at line 407 of file include/datafile/vDataFile.hh.

◆ SetDuration() [1/2]

void vDataFile::SetDuration ( FLTNB a_value )

inline

Definition at line 493 of file code/include/datafile/vDataFile.hh.

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◆ SetDuration() [2/2]

void vDataFile::SetDuration ( FLTNB a_value )

inline

Definition at line 517 of file include/datafile/vDataFile.hh.

◆ SetHeaderDataFileName() [1/2]

void vDataFile::SetHeaderDataFileName ( const string & a_headerFileName )

inline

Definition at line 453 of file code/include/datafile/vDataFile.hh.

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◆ SetHeaderDataFileName() [2/2]

void vDataFile::SetHeaderDataFileName ( const string & a_headerFileName )

inline

Definition at line 470 of file include/datafile/vDataFile.hh.

◆ SetIgnorePOIFlag() [1/2]

void vDataFile::SetIgnorePOIFlag ( bool a_ignorePOIFlag )

inline

Definition at line 445 of file code/include/datafile/vDataFile.hh.

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◆ SetIgnorePOIFlag() [2/2]

void vDataFile::SetIgnorePOIFlag ( bool a_ignorePOIFlag )

inline

Definition at line 462 of file include/datafile/vDataFile.hh.

◆ SetImageDimensionsAndQuantification() [1/2]

void vDataFile::SetImageDimensionsAndQuantification ( oImageDimensionsAndQuantification * ap_ImageDimensionsAndQuantification )

inline

Definition at line 430 of file code/include/datafile/vDataFile.hh.

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◆ SetImageDimensionsAndQuantification() [2/2]

void vDataFile::SetImageDimensionsAndQuantification ( oImageDimensionsAndQuantification * ap_ImageDimensionsAndQuantification )

inline

Definition at line 447 of file include/datafile/vDataFile.hh.

◆ SetNbEvents() [1/2]

void vDataFile::SetNbEvents ( int64_t a_value )

inline

Definition at line 477 of file code/include/datafile/vDataFile.hh.

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◆ SetNbEvents() [2/2]

void vDataFile::SetNbEvents ( int64_t a_value )

inline

Definition at line 501 of file include/datafile/vDataFile.hh.

◆ SetParametersFrom() [1/2]

int vDataFile::SetParametersFrom ( vDataFile * ap_DataFile )

Definition at line 260 of file code/src/datafile/vDataFile.cc.

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◆ SetParametersFrom() [2/2]

int vDataFile::SetParametersFrom ( vDataFile * ap_DataFile )

◆ SetPOIResolution() [1/2]

void vDataFile::SetPOIResolution ( FLTNB ap_value[3] )

inline

Definition at line 438 of file code/include/datafile/vDataFile.hh.

◆ SetPOIResolution() [2/2]

void vDataFile::SetPOIResolution ( FLTNB ap_value[3] )

inline

Definition at line 455 of file include/datafile/vDataFile.hh.

◆ SetSpecificParametersFrom() [1/2]

virtual int vDataFile::SetSpecificParametersFrom ( vDataFile * ap_DataFile )

privatepure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

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◆ SetSpecificParametersFrom() [2/2]

virtual int vDataFile::SetSpecificParametersFrom ( vDataFile * ap_DataFile )

privatepure virtual

Implemented in iDataFilePET, iDataFilePET, iDataFileSPECT, iDataFileSPECT, iDataFileCT, and iDataFileCT.

◆ SetStartTime() [1/2]

void vDataFile::SetStartTime ( FLTNB a_value )

inline

Definition at line 485 of file code/include/datafile/vDataFile.hh.

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◆ SetStartTime() [2/2]

void vDataFile::SetStartTime ( FLTNB a_value )

inline

Definition at line 509 of file include/datafile/vDataFile.hh.

◆ SetVerbose() [1/2]

void vDataFile::SetVerbose ( int a_verboseLevel )

inline

Definition at line 416 of file code/include/datafile/vDataFile.hh.

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◆ SetVerbose() [2/2]

void vDataFile::SetVerbose ( int a_verboseLevel )

inline

Definition at line 433 of file include/datafile/vDataFile.hh.

◆ Shuffle() [1/2]

int vDataFile::Shuffle ( int64_t nb_events_to_load )

virtual

!!!\ This function has been modified to be used specifically with a

Definition at line 608 of file code/src/datafile/vDataFile.cc.

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◆ Shuffle() [2/2]

virtual int vDataFile::Shuffle ( int64_t )

virtual

◆ WriteEvent() [1/2]

virtual int vDataFile::WriteEvent	(	vEvent *	ap_Event,
		int	a_th = `0`
	)

pure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

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◆ WriteEvent() [2/2]

virtual int vDataFile::WriteEvent	(	vEvent *	ap_Event,
		int	a_th = `0`
	)

pure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

◆ WriteHeader() [1/2]

vDataFile::WriteHeader ( )

pure virtual

This function is implemented in child classes.
Generate a header file according to the data output information.

Returns: 0 if success, and positive value otherwise.

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

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◆ WriteHeader() [2/2]

virtual int vDataFile::WriteHeader ( )

pure virtual

Implemented in iDataFileCT, iDataFileCT, iDataFileSPECT, iDataFileSPECT, iDataFilePET, and iDataFilePET.

Member Data Documentation

◆ m2p_additionalData

FLTNB** vDataFile::m2p_additionalData

Dynamic array for additional data to be used in reconstruction, 2 pointers: 1: number of additional data 2: the data

Definition at line 583 of file include/datafile/vDataFile.hh.

◆ m2p_BufferEvent

vEvent ** vDataFile::m2p_BufferEvent

protected

vEvent structure, used to read and transfer the raw data to each part of the algorithm (multithreaded)

Definition at line 577 of file code/include/datafile/vDataFile.hh.

◆ m2p_dataFile

fstream ** vDataFile::m2p_dataFile

protected

File associated to the raw data file (multithreaded)

Definition at line 576 of file code/include/datafile/vDataFile.hh.

◆ m_bedIndex

int vDataFile::m_bedIndex

protected

Bed position index corresponding to this data file

Definition at line 563 of file code/include/datafile/vDataFile.hh.

◆ m_bedPositionFlag

bool vDataFile::m_bedPositionFlag

protected

Flag indicating that a relative bed position has been provided

Definition at line 565 of file code/include/datafile/vDataFile.hh.

◆ m_calibrationFactor

FLTNB vDataFile::m_calibrationFactor

protected

Calibration factor for the data. Default value =1.0

Definition at line 562 of file code/include/datafile/vDataFile.hh.

◆ m_dataFileName

string vDataFile::m_dataFileName

protected

String containing the path to the raw datafile

Definition at line 555 of file code/include/datafile/vDataFile.hh.

◆ m_dataMode

int vDataFile::m_dataMode

protected

Flag indicating if the data is List (=0) or Histogram (=1) mode

Definition at line 557 of file code/include/datafile/vDataFile.hh.

◆ m_dataSpec

int vDataFile::m_dataSpec

protected

Flag indicating the physical specificity of the data: SPEC_EMISSION or SPEC_TRANSMISSION

Definition at line 559 of file code/include/datafile/vDataFile.hh.

◆ m_dataType

int vDataFile::m_dataType

protected

Flag indicating if the data is PET (=0),SPECT (=1) or TRANSMISSION type (=2)

Definition at line 558 of file code/include/datafile/vDataFile.hh.

◆ m_durationInSec

FLTNB vDataFile::m_durationInSec

protected

Duration of the acquisition (s)

Definition at line 561 of file code/include/datafile/vDataFile.hh.

◆ m_headerFileName

string vDataFile::m_headerFileName

protected

String containing the path to the header file

Definition at line 554 of file code/include/datafile/vDataFile.hh.

◆ m_ignorePOIFlag

bool vDataFile::m_ignorePOIFlag

protected

Flag to say if we ignore the POI data if present, or not. Default = false

Definition at line 570 of file code/include/datafile/vDataFile.hh.

◆ m_loadedAdditional

bool vDataFile::m_loadedAdditional

protected

Flag indicating if additional data have been loaded

Definition at line 624 of file include/datafile/vDataFile.hh.

◆ m_mpi1stEvent

int64_t vDataFile::m_mpi1stEvent

protected

First index managed by this MPI instance

Definition at line 578 of file code/include/datafile/vDataFile.hh.

◆ m_mpiLastEvent

int64_t vDataFile::m_mpiLastEvent

protected

Last index (included) managed by this MPI instance

Definition at line 579 of file code/include/datafile/vDataFile.hh.

◆ m_mpiNbEvents

int64_t vDataFile::m_mpiNbEvents

protected

Number of events managed by this MPI instance

Definition at line 580 of file code/include/datafile/vDataFile.hh.

◆ m_nbAdditionalData

int vDataFile::m_nbAdditionalData

protected

The number of additional data

Definition at line 622 of file include/datafile/vDataFile.hh.

◆ m_nbCustomFLTData

int vDataFile::m_nbCustomFLTData

protected

Nb of customizable EVTFLTDATA variables in the event

Definition at line 628 of file include/datafile/vDataFile.hh.

◆ m_nbCustomINTData

int vDataFile::m_nbCustomINTData

protected

Nb of customizable EVTINTDATA variables in the event

Definition at line 627 of file include/datafile/vDataFile.hh.

◆ m_nbEvents

int64_t vDataFile::m_nbEvents

protected

Total number of events in the raw data

Definition at line 556 of file code/include/datafile/vDataFile.hh.

◆ m_POIInfoFlag

bool vDataFile::m_POIInfoFlag

protected

Flag to say if POI information is included in the datafile for each event

Definition at line 569 of file code/include/datafile/vDataFile.hh.

◆ m_relativeBedPosition

FLTNB vDataFile::m_relativeBedPosition

protected

Bed relative position in mm

Definition at line 564 of file code/include/datafile/vDataFile.hh.

◆ m_scannerName

string vDataFile::m_scannerName

protected

Scanner name

Definition at line 566 of file code/include/datafile/vDataFile.hh.

◆ m_sizeEvent

int64_t vDataFile::m_sizeEvent

protected

Size of an event in the datafile (calculated from mandatory and optional fields)

Definition at line 575 of file code/include/datafile/vDataFile.hh.

◆ m_startTimeInSec

FLTNB vDataFile::m_startTimeInSec

protected

Start time of the acquisition (s)

Definition at line 560 of file code/include/datafile/vDataFile.hh.

◆ m_verbose

int vDataFile::m_verbose

protected

Verbosity

Definition at line 551 of file code/include/datafile/vDataFile.hh.

◆ mp_additionalDataSize

INTNB* vDataFile::mp_additionalDataSize

protected

The size of each additional data matrix (can differ in PET whether the data are for each TOF bin or not

Definition at line 623 of file include/datafile/vDataFile.hh.

◆ mp_ID

oImageDimensionsAndQuantification * vDataFile::mp_ID

protected

Pointer to the oImageDimensionsAndQuantification object

Definition at line 550 of file code/include/datafile/vDataFile.hh.

◆ mp_MappedFile

oMemoryMapped * vDataFile::mp_MappedFile

protected

The object managing the mapping of the datafile

Definition at line 581 of file code/include/datafile/vDataFile.hh.

◆ mp_mappedMemory

char * vDataFile::mp_mappedMemory

protected

The raw pointer directly mapped to the datafile

Definition at line 582 of file code/include/datafile/vDataFile.hh.

◆ mp_POIDirectionFlag

bool vDataFile::mp_POIDirectionFlag

protected

Flag to say which direction is included in the POI for each event; radial, tangential and axial

Definition at line 571 of file code/include/datafile/vDataFile.hh.

◆ mp_POIResolution

FLTNB vDataFile::mp_POIResolution

protected

POI resolution (position of interaction) for each direction: radial, tangential and axial

Definition at line 572 of file code/include/datafile/vDataFile.hh.

The documentation for this class was generated from the following files:

Public Member Functions

Public Attributes

Protected Attributes

Private Member Functions

Detailed Description

Constructor & Destructor Documentation

◆ vDataFile() [1/2]

◆ ~vDataFile() [1/2]

◆ vDataFile() [2/2]

◆ ~vDataFile() [2/2]

Member Function Documentation

◆ CheckConsistencyWithAnotherBedDataFile() [1/2]

◆ CheckConsistencyWithAnotherBedDataFile() [2/2]

◆ CheckFileSizeConsistency() [1/2]

◆ CheckFileSizeConsistency() [2/2]

◆ CheckParameters() [1/2]

◆ CheckParameters() [2/2]

◆ CheckSpecificConsistencyWithAnotherDataFile() [1/2]

◆ CheckSpecificConsistencyWithAnotherDataFile() [2/2]

◆ CheckSpecificParameters() [1/2]

◆ CheckSpecificParameters() [2/2]

◆ CloseFile() [1/2]

◆ CloseFile() [2/2]

◆ ComputeSizeEvent() [1/2]

◆ ComputeSizeEvent() [2/2]

◆ Describe() [1/2]

◆ Describe() [2/2]

◆ DescribeSpecific() [1/2]

◆ DescribeSpecific() [2/2]

◆ GetBedIndex() [1/2]

◆ GetBedIndex() [2/2]

◆ GetBedPositionFlag() [1/2]

◆ GetBedPositionFlag() [2/2]

◆ GetCalibrationFactor() [1/2]

◆ GetCalibrationFactor() [2/2]

◆ GetDataFileName() [1/2]

◆ GetDataFileName() [2/2]

◆ GetDataMode() [1/2]

◆ GetDataMode() [2/2]

◆ GetDataModeToString() [1/2]

◆ GetDataModeToString() [2/2]

◆ GetDataSpec() [1/2]

◆ GetDataSpec() [2/2]

◆ GetDataSpecToString() [1/2]

◆ GetDataSpecToString() [2/2]

◆ GetDataType() [1/2]

◆ GetDataType() [2/2]

◆ GetDataTypeToString() [1/2]

◆ GetDataTypeToString() [2/2]

◆ GetDuration() [1/2]

◆ GetDuration() [2/2]

◆ GetEvent() [1/2]

◆ GetEvent() [2/2]

◆ GetEventIndexStartAndStop() [1/2]

◆ GetEventIndexStartAndStop() [2/2]

◆ GetEventSize() [1/2]

◆ GetEventSize() [2/2]

◆ GetEventSpecific() [1/2]

◆ GetEventSpecific() [2/2]

◆ GetHeaderDataFileName() [1/2]

◆ GetHeaderDataFileName() [2/2]

◆ GetIgnorePOIFlag() [1/2]

◆ GetIgnorePOIFlag() [2/2]

◆ GetMaxRingDiff() [1/2]

◆ GetMaxRingDiff() [2/2]

◆ GetNbAdditionalData()

◆ GetNbEvents()

◆ GetNewAdditionalDataMatrix()

◆ GetPOIDirectionFlag() [1/2]

◆ GetPOIDirectionFlag() [2/2]

◆ GetPOIInfoFlag() [1/2]

◆ GetPOIInfoFlag() [2/2]

◆ GetPOIResolution() [1/2]

◆ GetPOIResolution() [2/2]

◆ GetRelativeBedPosition() [1/2]

◆ GetRelativeBedPosition() [2/2]

◆ GetScannerName() [1/2]

◆ GetScannerName() [2/2]

◆ GetSize() [1/2]

◆ GetSize() [2/2]