This is the base class for reconstructions, containing a framework with iteration and data subset loops.
It contains all the managers and the images. More...

#include <vAlgorithm.hh>

Inheritance diagram for vAlgorithm:

Collaboration diagram for vAlgorithm:

Public Member Functions
	vAlgorithm ()
	vAlgorithm constructor. Initialize the member variables to their default values. More...

virtual	~vAlgorithm ()
	vAlgorithm destructor. More...

int	Run ()
	Just call either the RunCPU or the RunGPU function as asked for. More...

int	RunCPU ()
	Perform the iterative loop of the algorithm. Function designed to be executed on the CPU only. More...

void	SetSaveSensitivityHistoFlag (bool a_saveSensitivityHistoFlag)

void	SetSaveSubsetImageFlag (bool a_saveImageAfterSubsets)

void	SetSaveDynamicBasisCoefficientImages (bool a_saveDynamicBasisCoefficients)

void	SetOptimizerManager (oOptimizerManager *ap_OptimizerManager)

void	SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)

void	SetImageSpace (oImageSpace *ap_ImageSpace)

void	SetProjectorManager (oProjectorManager *ap_ProjectorManager)

void	SetImageConvolverManager (oImageConvolverManager *ap_ImageConvolverManager)

void	SetImageProcessingManager (oImageProcessingManager *ap_ImageProcessingManager)

void	SetDynamicModelManager (oDynamicModelManager *ap_DynamicModelManager)

void	SetDeformationManager (oDeformationManager *ap_DeformationManager)

void	SetDataFile (vDataFile **a2p_DataFile)

void	SetGPUflag (bool a_flagGPU)

void	SetVerbose (int a_verboseLevel)

void	SetNbBeds (int a_nbBeds)

void	SetPathInitImage (string a_pathToInitialImage)

void	SetPathToAttenuationImage (string a_pathToAttenuationImage)

void	SetPathToSensitivityImage (string a_pathToSensitivityImage)

void	SetPathToMultiModalImage (vector< string > a_pathToMultiModalImage)

int	SetNbIterationsAndSubsets (const string &a_nbIterationsSubsets)

int	SetOutputIterations (const string &a_outputIterations)

virtual int	InitSpecificOptions (string a_specificOptions)

virtual void	ShowHelpSpecific ()
	Show help for the child algorithm. More...

	vAlgorithm ()

virtual	~vAlgorithm ()

int	Run ()

int	RunCPU ()

void	SetSaveSensitivityHistoFlag (bool a_saveSensitivityHistoFlag)

void	SetSaveSubsetImageFlag (bool a_saveImageAfterSubsets)

void	SetSaveDynamicBasisCoefficientImages (bool a_saveDynamicBasisCoefficients)

void	SetOptimizerManager (oOptimizerManager *ap_OptimizerManager)

void	SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)

void	SetImageSpace (oImageSpace *ap_ImageSpace)

void	SetProjectorManager (oProjectorManager *ap_ProjectorManager)

void	SetImageConvolverManager (oImageConvolverManager *ap_ImageConvolverManager)

void	SetImageProcessingManager (oImageProcessingManager *ap_ImageProcessingManager)

void	SetDynamicModelManager (oDynamicModelManager *ap_DynamicModelManager)

void	SetDeformationManager (oDeformationManager *ap_DeformationManager)

void	SetDataFile (vDataFile **a2p_DataFile)

void	SetGPUflag (bool a_flagGPU)

void	SetVerbose (int a_verboseLevel)

void	SetNbBeds (int a_nbBeds)

void	SetPathInitImage (string a_pathToInitialImage)

void	SetPathToAttenuationImage (string a_pathToAttenuationImage)

void	SetPathToSensitivityImage (string a_pathToSensitivityImage)

void	SetPathToMultiModalImage (vector< string > a_pathToMultiModalImage)

int	SetNbIterationsAndSubsets (const string &a_nbIterationsSubsets)

void	SetNbSkippedIterations (const string &a_skippedIterations)
	Set the number of first iterations to be skipped. More...

int	SetOutputIterations (const string &a_outputIterations)

virtual int	InitSpecificOptions (string a_specificOptions)

virtual void	ShowHelpSpecific ()

Protected Member Functions
virtual int	StepBeforeIterationLoop ()
	This function is called at the beginning of the RunCPU function. More...

virtual int	StepAfterIterationLoop ()
	This function is called at the end of the RunCPU function. More...

virtual int	StepBeforeSubsetLoop (int a_iteration)

virtual int	StepAfterSubsetLoop (int a_iteration)

virtual int	StepPreProcessInsideSubsetLoop (int a_iteration, int a_subset)

virtual int	StepPostProcessInsideSubsetLoop (int a_iteration, int a_subset)

virtual int	StepInnerLoopInsideSubsetLoop (int a_iteration, int a_subset, int a_bed)=0

virtual int	StepImageOutput (int a_iteration, int a_subset=-1)=0

virtual int	StepBeforeIterationLoop ()

virtual int	StepAfterIterationLoop ()

virtual int	StepBeforeSubsetLoop (int a_iteration)

virtual int	StepAfterSubsetLoop (int a_iteration)

virtual int	StepPreProcessInsideSubsetLoop (int a_iteration, int a_subset)

virtual int	StepPostProcessInsideSubsetLoop (int a_iteration, int a_subset)

virtual int	StepInnerLoopInsideSubsetLoop (int a_iteration, int a_subset, int a_bed)=0

virtual int	StepImageOutput (int a_iteration, int a_subset=-1)=0

Protected Attributes
int	m_nbIterations

int *	mp_nbSubsets

bool *	mp_outputIterations

int	m_verbose

bool	m_flagGPU

oImageDimensionsAndQuantification *	mp_ID

vDataFile **	m2p_DataFile

oProjectorManager *	mp_ProjectorManager

oOptimizerManager *	mp_OptimizerManager

oDeformationManager *	mp_DeformationManager

oDynamicModelManager *	mp_DynamicModelManager

oImageSpace *	mp_ImageSpace

oImageConvolverManager *	mp_ImageConvolverManager

oImageProcessingManager *	mp_ImageProcessingManager

int	m_nbBeds

string	m_pathToInitialImg

string	m_pathToAtnImg

string	m_pathToSensitivityImg

vector< string >	m_pathToMultiModalImg

bool	m_saveSensitivityHistoFlag

bool	m_saveImageAfterSubsets

bool	m_saveDynamicBasisCoefficients

int	m_nbSkippedIterations

Detailed Description

This is the base class for reconstructions, containing a framework with iteration and data subset loops.
It contains all the managers and the images.

Definition at line 29 of file code/include/algorithm/vAlgorithm.hh.

Constructor & Destructor Documentation

◆ vAlgorithm() [1/2]

vAlgorithm::vAlgorithm ( )

vAlgorithm constructor. Initialize the member variables to their default values.

Definition at line 17 of file code/src/algorithm/vAlgorithm.cc.

◆ ~vAlgorithm() [1/2]

vAlgorithm::~vAlgorithm ( )

virtual

vAlgorithm destructor.

Definition at line 50 of file code/src/algorithm/vAlgorithm.cc.

◆ vAlgorithm() [2/2]

vAlgorithm::vAlgorithm ( )

◆ ~vAlgorithm() [2/2]

virtual vAlgorithm::~vAlgorithm ( )

virtual

Member Function Documentation

◆ InitSpecificOptions() [1/2]

int vAlgorithm::InitSpecificOptions ( string a_specificOptions )

virtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 486 of file code/src/algorithm/vAlgorithm.cc.

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◆ InitSpecificOptions() [2/2]

virtual int vAlgorithm::InitSpecificOptions ( string a_specificOptions )

virtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

◆ Run() [1/2]

int vAlgorithm::Run ( )

◆ Run() [2/2]

int vAlgorithm::Run ( )

Just call either the RunCPU or the RunGPU function as asked for.

Returns: 0 if success, positive value otherwise

Definition at line 210 of file code/src/algorithm/vAlgorithm.cc.

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◆ RunCPU() [1/2]

int vAlgorithm::RunCPU ( )

Perform the iterative loop of the algorithm. Function designed to be executed on the CPU only.

Loops over the iterations, data subsets, bed positions

StepBeforeIterationLoop()
/ Loop on iterations
| StepBeforeSubsetLoop(iteration)
| / Loop on data subsets
| | StepPreProcessInsideSubsetLoop(iteration,subset)
| | / Loop on bed positions
| | | StepInnerLoopInsideSubsetLoop(iteration,subset,bed)
| | StepPostProcessInsideSubsetLoop(iteration,subset)
| StepAfterSubsetLoop(iteration)
StepAfterIterationLoop()

Returns: 0 if success, positive value otherwise

Definition at line 229 of file code/src/algorithm/vAlgorithm.cc.

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◆ RunCPU() [2/2]

int vAlgorithm::RunCPU ( )

◆ SetDataFile() [1/2]

void vAlgorithm::SetDataFile ( vDataFile ** a2p_DataFile )

inline

Definition at line 168 of file include/algorithm/vAlgorithm.hh.

◆ SetDataFile() [2/2]

void vAlgorithm::SetDataFile ( vDataFile ** a2p_DataFile )

inline

Definition at line 168 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetDeformationManager() [1/2]

void vAlgorithm::SetDeformationManager ( oDeformationManager * ap_DeformationManager )

inline

Definition at line 161 of file include/algorithm/vAlgorithm.hh.

◆ SetDeformationManager() [2/2]

void vAlgorithm::SetDeformationManager ( oDeformationManager * ap_DeformationManager )

inline

Definition at line 161 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetDynamicModelManager() [1/2]

void vAlgorithm::SetDynamicModelManager ( oDynamicModelManager * ap_DynamicModelManager )

inline

Definition at line 154 of file include/algorithm/vAlgorithm.hh.

◆ SetDynamicModelManager() [2/2]

void vAlgorithm::SetDynamicModelManager ( oDynamicModelManager * ap_DynamicModelManager )

inline

Definition at line 154 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetGPUflag() [1/2]

void vAlgorithm::SetGPUflag ( bool a_flagGPU )

inline

Definition at line 175 of file include/algorithm/vAlgorithm.hh.

◆ SetGPUflag() [2/2]

void vAlgorithm::SetGPUflag ( bool a_flagGPU )

inline

Definition at line 175 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetImageConvolverManager() [1/2]

void vAlgorithm::SetImageConvolverManager ( oImageConvolverManager * ap_ImageConvolverManager )

inline

Definition at line 140 of file include/algorithm/vAlgorithm.hh.

◆ SetImageConvolverManager() [2/2]

void vAlgorithm::SetImageConvolverManager ( oImageConvolverManager * ap_ImageConvolverManager )

inline

Definition at line 140 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetImageDimensionsAndQuantification() [1/2]

void vAlgorithm::SetImageDimensionsAndQuantification ( oImageDimensionsAndQuantification * ap_ImageDimensionsAndQuantification )

inline

Definition at line 119 of file include/algorithm/vAlgorithm.hh.

◆ SetImageDimensionsAndQuantification() [2/2]

void vAlgorithm::SetImageDimensionsAndQuantification ( oImageDimensionsAndQuantification * ap_ImageDimensionsAndQuantification )

inline

Definition at line 119 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetImageProcessingManager() [1/2]

void vAlgorithm::SetImageProcessingManager ( oImageProcessingManager * ap_ImageProcessingManager )

inline

Definition at line 147 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetImageProcessingManager() [2/2]

void vAlgorithm::SetImageProcessingManager ( oImageProcessingManager * ap_ImageProcessingManager )

inline

Definition at line 147 of file include/algorithm/vAlgorithm.hh.

◆ SetImageSpace() [1/2]

void vAlgorithm::SetImageSpace ( oImageSpace * ap_ImageSpace )

inline

Definition at line 126 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetImageSpace() [2/2]

void vAlgorithm::SetImageSpace ( oImageSpace * ap_ImageSpace )

inline

Definition at line 126 of file include/algorithm/vAlgorithm.hh.

◆ SetNbBeds() [1/2]

void vAlgorithm::SetNbBeds ( int a_nbBeds )

inline

Definition at line 189 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetNbBeds() [2/2]

void vAlgorithm::SetNbBeds ( int a_nbBeds )

inline

Definition at line 189 of file include/algorithm/vAlgorithm.hh.

◆ SetNbIterationsAndSubsets() [1/2]

int vAlgorithm::SetNbIterationsAndSubsets ( const string & a_nbIterationsSubsets )

Definition at line 62 of file code/src/algorithm/vAlgorithm.cc.

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◆ SetNbIterationsAndSubsets() [2/2]

int vAlgorithm::SetNbIterationsAndSubsets ( const string & a_nbIterationsSubsets )

◆ SetNbSkippedIterations()

public vAlgorithm::SetNbSkippedIterations ( const string & a_skippedIterations )

inline

Set the number of first iterations to be skipped.

Parameters

a_skippedIterations

Definition at line 233 of file include/algorithm/vAlgorithm.hh.

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◆ SetOptimizerManager() [1/2]

void vAlgorithm::SetOptimizerManager ( oOptimizerManager * ap_OptimizerManager )

inline

Definition at line 112 of file include/algorithm/vAlgorithm.hh.

◆ SetOptimizerManager() [2/2]

void vAlgorithm::SetOptimizerManager ( oOptimizerManager * ap_OptimizerManager )

inline

Definition at line 112 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetOutputIterations() [1/2]

int vAlgorithm::SetOutputIterations ( const string & a_outputIterations )

Definition at line 121 of file code/src/algorithm/vAlgorithm.cc.

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◆ SetOutputIterations() [2/2]

int vAlgorithm::SetOutputIterations ( const string & a_outputIterations )

◆ SetPathInitImage() [1/2]

void vAlgorithm::SetPathInitImage ( string a_pathToInitialImage )

inline

Definition at line 196 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetPathInitImage() [2/2]

void vAlgorithm::SetPathInitImage ( string a_pathToInitialImage )

inline

Definition at line 196 of file include/algorithm/vAlgorithm.hh.

◆ SetPathToAttenuationImage() [1/2]

void vAlgorithm::SetPathToAttenuationImage ( string a_pathToAttenuationImage )

inline

Definition at line 203 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetPathToAttenuationImage() [2/2]

void vAlgorithm::SetPathToAttenuationImage ( string a_pathToAttenuationImage )

inline

Definition at line 203 of file include/algorithm/vAlgorithm.hh.

◆ SetPathToMultiModalImage() [1/2]

void vAlgorithm::SetPathToMultiModalImage ( vector< string > a_pathToMultiModalImage )

inline

Definition at line 217 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetPathToMultiModalImage() [2/2]

void vAlgorithm::SetPathToMultiModalImage ( vector< string > a_pathToMultiModalImage )

inline

Definition at line 217 of file include/algorithm/vAlgorithm.hh.

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◆ SetPathToSensitivityImage() [1/2]

void vAlgorithm::SetPathToSensitivityImage ( string a_pathToSensitivityImage )

inline

Definition at line 210 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetPathToSensitivityImage() [2/2]

void vAlgorithm::SetPathToSensitivityImage ( string a_pathToSensitivityImage )

inline

Definition at line 210 of file include/algorithm/vAlgorithm.hh.

◆ SetProjectorManager() [1/2]

void vAlgorithm::SetProjectorManager ( oProjectorManager * ap_ProjectorManager )

inline

Definition at line 133 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetProjectorManager() [2/2]

void vAlgorithm::SetProjectorManager ( oProjectorManager * ap_ProjectorManager )

inline

Definition at line 133 of file include/algorithm/vAlgorithm.hh.

◆ SetSaveDynamicBasisCoefficientImages() [1/2]

void vAlgorithm::SetSaveDynamicBasisCoefficientImages ( bool a_saveDynamicBasisCoefficients )

inline

Definition at line 105 of file include/algorithm/vAlgorithm.hh.

◆ SetSaveDynamicBasisCoefficientImages() [2/2]

void vAlgorithm::SetSaveDynamicBasisCoefficientImages ( bool a_saveDynamicBasisCoefficients )

inline

Definition at line 105 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetSaveSensitivityHistoFlag() [1/2]

void vAlgorithm::SetSaveSensitivityHistoFlag ( bool a_saveSensitivityHistoFlag )

inline

Definition at line 91 of file include/algorithm/vAlgorithm.hh.

◆ SetSaveSensitivityHistoFlag() [2/2]

void vAlgorithm::SetSaveSensitivityHistoFlag ( bool a_saveSensitivityHistoFlag )

inline

Definition at line 91 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetSaveSubsetImageFlag() [1/2]

void vAlgorithm::SetSaveSubsetImageFlag ( bool a_saveImageAfterSubsets )

inline

Definition at line 98 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetSaveSubsetImageFlag() [2/2]

void vAlgorithm::SetSaveSubsetImageFlag ( bool a_saveImageAfterSubsets )

inline

Definition at line 98 of file include/algorithm/vAlgorithm.hh.

◆ SetVerbose() [1/2]

void vAlgorithm::SetVerbose ( int a_verboseLevel )

inline

Definition at line 182 of file code/include/algorithm/vAlgorithm.hh.

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◆ SetVerbose() [2/2]

void vAlgorithm::SetVerbose ( int a_verboseLevel )

inline

Definition at line 182 of file include/algorithm/vAlgorithm.hh.

◆ ShowHelpSpecific() [1/2]

public virtual vAlgorithm::ShowHelpSpecific ( )

inlinevirtual

Show help for the child algorithm.

Reimplemented in iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 250 of file code/include/algorithm/vAlgorithm.hh.

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◆ ShowHelpSpecific() [2/2]

virtual void vAlgorithm::ShowHelpSpecific ( )

inlinevirtual

Reimplemented in iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 257 of file include/algorithm/vAlgorithm.hh.

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◆ StepAfterIterationLoop() [1/2]

int vAlgorithm::StepAfterIterationLoop ( )

protectedvirtual

This function is called at the end of the RunCPU function.

Returns: 0 if success, positive value otherwise.

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 454 of file code/src/algorithm/vAlgorithm.cc.

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◆ StepAfterIterationLoop() [2/2]

virtual int vAlgorithm::StepAfterIterationLoop ( )

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

◆ StepAfterSubsetLoop() [1/2]

int vAlgorithm::StepAfterSubsetLoop ( int a_iteration )

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 443 of file code/src/algorithm/vAlgorithm.cc.

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◆ StepAfterSubsetLoop() [2/2]

virtual int vAlgorithm::StepAfterSubsetLoop ( int a_iteration )

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

◆ StepBeforeIterationLoop() [1/2]

int vAlgorithm::StepBeforeIterationLoop ( )

protectedvirtual

This function is called at the beginning of the RunCPU function.

Returns: 0 if success, positive value otherwise.

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 365 of file code/src/algorithm/vAlgorithm.cc.

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◆ StepBeforeIterationLoop() [2/2]

virtual int vAlgorithm::StepBeforeIterationLoop ( )

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

◆ StepBeforeSubsetLoop() [1/2]

int vAlgorithm::StepBeforeSubsetLoop ( int a_iteration )

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 410 of file code/src/algorithm/vAlgorithm.cc.

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◆ StepBeforeSubsetLoop() [2/2]

virtual int vAlgorithm::StepBeforeSubsetLoop ( int a_iteration )

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

◆ StepImageOutput() [1/2]

int vAlgorithm::StepImageOutput	(	int	a_iteration,
		int	a_subset = `-1`
	)

protectedpure virtual

Implemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 475 of file code/src/algorithm/vAlgorithm.cc.

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◆ StepImageOutput() [2/2]

virtual int vAlgorithm::StepImageOutput	(	int	a_iteration,
		int	a_subset = `-1`
	)

protectedpure virtual

Implemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

◆ StepInnerLoopInsideSubsetLoop() [1/2]

virtual int vAlgorithm::StepInnerLoopInsideSubsetLoop	(	int	a_iteration,
		int	a_subset,
		int	a_bed
	)

protectedpure virtual

Implemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

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◆ StepInnerLoopInsideSubsetLoop() [2/2]

virtual int vAlgorithm::StepInnerLoopInsideSubsetLoop	(	int	a_iteration,
		int	a_subset,
		int	a_bed
	)

protectedpure virtual

Implemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

◆ StepPostProcessInsideSubsetLoop() [1/2]

int vAlgorithm::StepPostProcessInsideSubsetLoop	(	int	a_iteration,
		int	a_subset
	)

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 432 of file code/src/algorithm/vAlgorithm.cc.

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◆ StepPostProcessInsideSubsetLoop() [2/2]

virtual int vAlgorithm::StepPostProcessInsideSubsetLoop	(	int	a_iteration,
		int	a_subset
	)

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

◆ StepPreProcessInsideSubsetLoop() [1/2]

int vAlgorithm::StepPreProcessInsideSubsetLoop	(	int	a_iteration,
		int	a_subset
	)

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Definition at line 421 of file code/src/algorithm/vAlgorithm.cc.

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◆ StepPreProcessInsideSubsetLoop() [2/2]

virtual int vAlgorithm::StepPreProcessInsideSubsetLoop	(	int	a_iteration,
		int	a_subset
	)

protectedvirtual

Reimplemented in iIterativeAlgorithm, iIterativeAlgorithm, iRCPGSAlgorithm, and iRCPGSAlgorithm.

Member Data Documentation

◆ m2p_DataFile

vDataFile ** vAlgorithm::m2p_DataFile

protected

Pointer to the array of vDataFile object

Definition at line 324 of file code/include/algorithm/vAlgorithm.hh.

◆ m_flagGPU

bool vAlgorithm::m_flagGPU

protected

Do we use GPU or not (default=false)

Definition at line 322 of file code/include/algorithm/vAlgorithm.hh.

◆ m_nbBeds

int vAlgorithm::m_nbBeds

protected

number of bed FOVs (1 datafile by bed) (default=-1)

Definition at line 332 of file code/include/algorithm/vAlgorithm.hh.

◆ m_nbIterations

int vAlgorithm::m_nbIterations

protected

Number of iterations (default=1)

Definition at line 318 of file code/include/algorithm/vAlgorithm.hh.

◆ m_nbSkippedIterations

int vAlgorithm::m_nbSkippedIterations

protected

Number of first iterations to be skipped (default=0)

Definition at line 326 of file include/algorithm/vAlgorithm.hh.

◆ m_pathToAtnImg

string vAlgorithm::m_pathToAtnImg

protected

String of the path to the attenuation images

Definition at line 334 of file code/include/algorithm/vAlgorithm.hh.

◆ m_pathToInitialImg

string vAlgorithm::m_pathToInitialImg

protected

String containing the path to an initialization image

Definition at line 333 of file code/include/algorithm/vAlgorithm.hh.

◆ m_pathToMultiModalImg

vector< string > vAlgorithm::m_pathToMultiModalImg

protected

String vector containing paths to multimodal images

Definition at line 336 of file code/include/algorithm/vAlgorithm.hh.

◆ m_pathToSensitivityImg

string vAlgorithm::m_pathToSensitivityImg

protected

String containing the path to a sensitivity image

Definition at line 335 of file code/include/algorithm/vAlgorithm.hh.

◆ m_saveDynamicBasisCoefficients

bool vAlgorithm::m_saveDynamicBasisCoefficients

protected

Flag specifying that the dynamic basis coefficient images will be saved

Definition at line 339 of file code/include/algorithm/vAlgorithm.hh.

◆ m_saveImageAfterSubsets

bool vAlgorithm::m_saveImageAfterSubsets

protected

Flag specifying that the image has to be saved after each subset

Definition at line 338 of file code/include/algorithm/vAlgorithm.hh.

◆ m_saveSensitivityHistoFlag

bool vAlgorithm::m_saveSensitivityHistoFlag

protected

Flag specifying that the sensitivity image has to be saved for each subset/iteration in histogram mode

Definition at line 337 of file code/include/algorithm/vAlgorithm.hh.

◆ m_verbose

int vAlgorithm::m_verbose

protected

Verbosity (default=-1)

Definition at line 321 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_DeformationManager

oDeformationManager * vAlgorithm::mp_DeformationManager

protected

Pointer to the Deformation Manager object

Definition at line 327 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_DynamicModelManager

oDynamicModelManager * vAlgorithm::mp_DynamicModelManager

protected

Pointer to the Dynamic Model Manager object

Definition at line 328 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_ID

oImageDimensionsAndQuantification * vAlgorithm::mp_ID

protected

Pointer to the oImageDimensionsAndQuantification object

Definition at line 323 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_ImageConvolverManager

oImageConvolverManager * vAlgorithm::mp_ImageConvolverManager

protected

Pointer to the Image Convolver Manager object

Definition at line 330 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_ImageProcessingManager

oImageProcessingManager * vAlgorithm::mp_ImageProcessingManager

protected

Pointer to the Image Processing Manager object

Definition at line 331 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_ImageSpace

oImageSpace * vAlgorithm::mp_ImageSpace

protected

Pointer to the Image Space object

Definition at line 329 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_nbSubsets

int * vAlgorithm::mp_nbSubsets

protected

Number of subsets (default=1)

Definition at line 319 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_OptimizerManager

oOptimizerManager * vAlgorithm::mp_OptimizerManager

protected

Pointer to the Optimizer Manager object

Definition at line 326 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_outputIterations

bool * vAlgorithm::mp_outputIterations

protected

A boolean for each iteration saying if we save it or not

Definition at line 320 of file code/include/algorithm/vAlgorithm.hh.

◆ mp_ProjectorManager

oProjectorManager * vAlgorithm::mp_ProjectorManager

protected

Pointer to the Projector Manager object

Definition at line 325 of file code/include/algorithm/vAlgorithm.hh.

The documentation for this class was generated from the following files:

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ vAlgorithm() [1/2]

◆ ~vAlgorithm() [1/2]

◆ vAlgorithm() [2/2]

◆ ~vAlgorithm() [2/2]

Member Function Documentation

◆ InitSpecificOptions() [1/2]

◆ InitSpecificOptions() [2/2]

◆ Run() [1/2]

◆ Run() [2/2]

◆ RunCPU() [1/2]

◆ RunCPU() [2/2]

◆ SetDataFile() [1/2]

◆ SetDataFile() [2/2]

◆ SetDeformationManager() [1/2]

◆ SetDeformationManager() [2/2]

◆ SetDynamicModelManager() [1/2]

◆ SetDynamicModelManager() [2/2]

◆ SetGPUflag() [1/2]

◆ SetGPUflag() [2/2]

◆ SetImageConvolverManager() [1/2]

◆ SetImageConvolverManager() [2/2]

◆ SetImageDimensionsAndQuantification() [1/2]

◆ SetImageDimensionsAndQuantification() [2/2]

◆ SetImageProcessingManager() [1/2]

◆ SetImageProcessingManager() [2/2]

◆ SetImageSpace() [1/2]

◆ SetImageSpace() [2/2]

◆ SetNbBeds() [1/2]

◆ SetNbBeds() [2/2]

◆ SetNbIterationsAndSubsets() [1/2]

◆ SetNbIterationsAndSubsets() [2/2]

◆ SetNbSkippedIterations()

◆ SetOptimizerManager() [1/2]

◆ SetOptimizerManager() [2/2]

◆ SetOutputIterations() [1/2]

◆ SetOutputIterations() [2/2]

◆ SetPathInitImage() [1/2]

◆ SetPathInitImage() [2/2]

◆ SetPathToAttenuationImage() [1/2]

◆ SetPathToAttenuationImage() [2/2]

◆ SetPathToMultiModalImage() [1/2]

◆ SetPathToMultiModalImage() [2/2]

◆ SetPathToSensitivityImage() [1/2]

◆ SetPathToSensitivityImage() [2/2]

◆ SetProjectorManager() [1/2]

◆ SetProjectorManager() [2/2]

◆ SetSaveDynamicBasisCoefficientImages() [1/2]

◆ SetSaveDynamicBasisCoefficientImages() [2/2]

◆ SetSaveSensitivityHistoFlag() [1/2]

◆ SetSaveSensitivityHistoFlag() [2/2]

◆ SetSaveSubsetImageFlag() [1/2]

◆ SetSaveSubsetImageFlag() [2/2]

◆ SetVerbose() [1/2]

◆ SetVerbose() [2/2]

◆ ShowHelpSpecific() [1/2]

◆ ShowHelpSpecific() [2/2]

◆ StepAfterIterationLoop() [1/2]

◆ StepAfterIterationLoop() [2/2]

◆ StepAfterSubsetLoop() [1/2]

◆ StepAfterSubsetLoop() [2/2]

◆ StepBeforeIterationLoop() [1/2]

◆ StepBeforeIterationLoop() [2/2]

◆ StepBeforeSubsetLoop() [1/2]

◆ StepBeforeSubsetLoop() [2/2]

◆ StepImageOutput() [1/2]

◆ StepImageOutput() [2/2]

◆ StepInnerLoopInsideSubsetLoop() [1/2]

◆ StepInnerLoopInsideSubsetLoop() [2/2]

◆ StepPostProcessInsideSubsetLoop() [1/2]

◆ StepPostProcessInsideSubsetLoop() [2/2]

◆ StepPreProcessInsideSubsetLoop() [1/2]

◆ StepPreProcessInsideSubsetLoop() [2/2]

Member Data Documentation

◆ m2p_DataFile

◆ m_flagGPU