oImageDimensionsAndQuantification Class Reference

This class is designed to manage all dimensions and quantification related stuff. More...

#include <oImageDimensionsAndQuantification.hh>

Collaboration diagram for oImageDimensionsAndQuantification:

Public Member Functions
	oImageDimensionsAndQuantification ()
	The constructor of oImageDimensionsAndQuantification. More...
	~oImageDimensionsAndQuantification ()
	The destructor of oImageDimensionsAndQuantification. More...
void	SetDefault ()
	A function used to set number of threads and MPI instances to 1 and bypass the CheckParameters() function. More...
int	CheckParameters ()
	A function used to check the parameters settings. More...
int	Initialize ()
	A function used to initialize all that is needed. More...
void	CheckNumberOfProjectionThreadsConsistencyWithDataFileSize (vDataFile **a2p_DataFile)
int	DealWithBedPositions (vDataFile **a2p_DataFile)
void	ResetCurrentDynamicIndices ()
	Call the eponym function from the oDynamicDataManager class using the member object. More...
int	InitDynamicData (string a_pathTo4DDataSplittingFile, int a_respMotionCorrectionFlag, int a_cardMotionCorrectionFlag, int a_invMotionCorrectionFlag, int a_nbRespGates, int a_nbCardGates)
int	CheckDynamicParameters (int64_t a_nbEvents)
int	DynamicSwitch (int64_t a_currentEventIndex, uint32_t a_currentTime, int a_bed, int a_th)
bool	IsRespMotionEnabled ()
bool	IsCardMotionEnabled ()
bool	IsPMotionEnabled ()
void	SetRespMotionFlagOn ()
	Call the eponym function from the oDynamicDataManager class using the member object. More...
void	SetCardMotionFlagOn ()
	Call the eponym function from the oDynamicDataManager class using the member object. More...
void	SetPMotionFlagOn ()
	Call the eponym function from the oDynamicDataManager class using the member object. More...
int	GetCurrentRespGate (int a_th)
int	GetCurrentCardGate (int a_th)
int	GetPMotionFirstIndexForFrame (int a_fr)
int	GetPMotionLastIndexForFrame (int a_fr)
int	GetNb1stMotImgsForLMS (int a_fr)
int	GetNb2ndMotImgsForLMS ()
	call the eponym function from the oDynamicDataManager object More...
FLTNB	GetListPMotionWeightInFrameForLMS (int a_fr, int a_pmsset)
int	GetCurrentRespImage (int a_th)
int	GetCurrentCardImage (int a_th)
int	GetCurrentTimeFrame (int a_th)
int	GetCurrentPMotionIndex (int a_th)
int	GetNbIPatMotionSubsets ()
	call the eponym function from the oDynamicDataManager object More...
HPFLTNB	GetdurationPerGate (int a_fr, int a_respGate)
bool	GateDurationProvided ()
int	GetDynRecoType ()
void	SetVerbose (int a_verbose)
int	GetNbThreadsForProjection ()
	Get the number of threads used for projections. More...
int	GetNbThreadsForImageComputation ()
	Get the number of threads used for image operations. More...
int	GetNbThreadsMax ()
	Get the maximum between the number of threads used for projections and image operations. More...
int	SetNbThreads (const string &a_nbThreads)
void	SetMPIRankAndSize (int a_mpiRank, int a_mpiSize)
int	GetMPISize ()
	Get the MPI size (the number of MPI instances) More...
int	GetMPIRank ()
	Get the MPI instance number (the rank) More...
int	GetNbBeds ()
	Get the number of bed positions. More...
void	SetNbBeds (int a_nbBeds)
FLTNB	GetBedPosition (int a_bedIndex)
bool	GetProvidedBedPositionFlag ()
	Say if the bed relative position was provided from the datafile or not. More...
int	GetNbTimeFrames ()
	Get the number of time frames. More...
int	GetNbTimeBasisFunctions ()
	Get the number of time basis functions. More...
FLTNB	GetTimeBasisCoefficient (int a_timeBasisFunction, int a_timeFrame)
FLTNB	GetFrameDurationInSec (int a_bed, int a_frame)
FLTNB	GetFrameTimeStartInSec (int a_bed, int a_frame)
FLTNB	GetFrameTimeStopInSec (int a_bed, int a_frame)
FLTNB	GetFinalTimeStopInSec (int a_bed)
uint32_t	GetFrameDurationInMs (int a_bed, int a_frame)
uint32_t	GetFrameTimeStartInMs (int a_bed, int a_frame)
uint32_t	GetFrameTimeStopInMs (int a_bed, int a_frame)
uint32_t	GetFinalTimeStopInMs (int a_bed)
uint32_t *	GetFramesTimeStartsArray (int a_bed)
uint32_t *	GetFramesTimeStopArray (int a_bed)
uint32_t *	GetFramesTimeDurationsArray (int a_bed)
void	SetFrames (const string &a_frameList)
void	SetNbTimeBasisFunctions (int a_nbTimeBasisFunctions)
void	SetTimeBasisFunctions (FLTNB **a_m2pTimeBasisFunctions)
void	SetRespBasisFunctions (FLTNB **a_m2pRespBasisFunctions)
void	SetCardBasisFunctions (FLTNB **a_m2pCardBasisFunctions)
int	SetAcquisitionTime (int a_bed, FLTNB a_timeStartInSec, FLTNB a_durationInSec, string a_GateListDurationsInSec)
bool	GetTimeStaticFlag ()
	Get the time static flag that says if the reconstruction has only one frame or not. More...
int	GetNbRespGates ()
	Get the number of respiratory gates. More...
int	GetNbRespBasisFunctions ()
	Get the number of respiratory basis functions. More...
FLTNB	GetRespBasisCoefficient (int a_respBasisFunction, int a_respGate)
void	SetNbRespGates (int a_nbRespGates)
void	SetNbRespBasisFunctions (int a_nbRespBasisFunctions)
void	SetRespBasisFunctionsFile (const string &a_respBasisFunctionsFile)
bool	GetRespStaticFlag ()
	Get the respiratory static flag that says if the reconstruction has only one respiratory gate or not. More...
int	GetNbCardGates ()
	Get the number of cardiac gates. More...
int	GetNbCardBasisFunctions ()
	Get the number of cardiac basis functions. More...
FLTNB	GetCardBasisCoefficient (int a_cardBasisFunction, int a_cardGate)
void	SetNbCardGates (int a_nbCardGates)
void	SetNbCardBasisFunctions (int a_nbCardBasisFunctions)
void	SetCardBasisFunctionsFile (const string &a_cardBasisFunctionsFile)
bool	GetCardStaticFlag ()
	Get the cardiac static flag that says if the reconstruction has only one cardiac gate or not. More...
INTNB	GetNbVoxX ()
	Get the number of voxels along the X axis. More...
INTNB	GetNbVoxY ()
	Get the number of voxels along the Y axis. More...
INTNB	GetNbVoxZ ()
	Get the number of voxels along the Z axis. More...
INTNB	GetNbVoxXY ()
	Get the number of voxels in a slice. More...
INTNB	GetNbVoxXYZ ()
	Get the total number of voxels. More...
INTNB	GetNbVoxDiagonal ()
	Get an estimation of the number of voxels along the image diagonal. More...
void	SetNbVoxX (INTNB a_nbVoxX)
void	SetNbVoxY (INTNB a_nbVoxY)
void	SetNbVoxZ (INTNB a_nbVoxZ)
FLTNB	GetVoxSizeX ()
	Get the voxel's size along the X axis, in mm. More...
FLTNB	GetVoxSizeY ()
	Get the voxel's size along the Y axis, in mm. More...
FLTNB	GetVoxSizeZ ()
	Get the voxel's size along the Z axis, in mm. More...
FLTNB	GetFOVSizeX ()
	Get the size of the field-of-view along the X axis, in mm. More...
FLTNB	GetFOVSizeY ()
	Get the size of the field-of-view along the Y axis, in mm. More...
FLTNB	GetFOVSizeZ ()
	Get the size of the field-of-view along the Z axis, in mm. More...
void	SetVoxSizeX (FLTNB a_voxSizeX)
void	SetVoxSizeY (FLTNB a_voxSizeY)
void	SetVoxSizeZ (FLTNB a_voxSizeZ)
void	SetFOVSizeX (FLTNB a_fovSizeX)
void	SetFOVSizeY (FLTNB a_fovSizeY)
void	SetFOVSizeZ (FLTNB a_fovSizeZ)
void	SetFOVOutMasking (FLTNB a_fovOutPercent, INTNB a_nbSliceOutMask)
FLTNB	GetFOVOutPercent ()
	Get the percentage of transaxial unmasked FOV. More...
INTNB	GetNbSliceOutMask ()
	Get the number of extrem slices that will be masked at each side. More...
int	SetFlipOut (const string &a_flipOut)
bool	GetFlipOutX ()
	Get the boolean saying if the output image must be flipped along the X axis. More...
bool	GetFlipOutY ()
	Get the boolean saying if the output image must be flipped along the Y axis. More...
bool	GetFlipOutZ ()
	Get the boolean saying if the output image must be flipped along the Z axis. More...
FLTNB	GetOffsetX ()
	Get the image offset along the X axis, in mm. More...
FLTNB	GetOffsetY ()
	Get the image offset along the Y axis, in mm. More...
FLTNB	GetOffsetZ ()
	Get the image offset along the Z axis, in mm. More...
void	SetOffsetX (FLTNB a_offsetX)
void	SetOffsetY (FLTNB a_offsetY)
void	SetOffsetZ (FLTNB a_offsetZ)
FLTNB	GetQuantificationFactor (int a_bed, int a_frame, int a_respGate, int a_cardGate)
long double	GetLambda ()
int	SetCalibrationFactor (int a_bed, FLTNB a_calibrationFactor)
int	SetPETIsotope (int a_bed, const string &a_isotope)
int	SetSPECTIsotope (int a_bed, const string &a_isotope)
int	SetDynamicSpecificQuantificationFactors (const string &a_quantificationFile)
int	ProcessAndSetMask (FLTNB *ap_maskImage)
bool	IsVoxelMasked (INTNB a_voxIndex)
void	SetIgnoredCorrections (const string &a_ignoredCorrectionsList)
bool	GetIgnoreAttnCorrectionFlag ()
	Get the boolean that says if the attenuation correction is ignored or not. More...
bool	GetIgnoreNormCorrectionFlag ()
	Get the boolean that says if the normalization correction is ignored or not. More...
bool	GetIgnoreScatCorrectionFlag ()
	Get the boolean that says if the scatter correction is ignored or not. More...
bool	GetIgnoreRandCorrectionFlag ()
	Get the boolean that says if the random correction is ignored or not. More...
bool	GetIgnoreDecaCorrectionFlag ()
	Get the boolean that says if the decay correction is ignored or not. More...
bool	GetIgnoreBratCorrectionFlag ()
	Get the boolean that says if the branching ratio correction is ignored or not. More...
bool	GetIgnoreFdurCorrectionFlag ()
	Get the boolean that says if the frame duration correction is ignored or not. More...
bool	GetIgnoreCaliCorrectionFlag ()
	Get the boolean that says if the calibration correction is ignored or not. More...
int	GetNbMultiModalImages ()
	Get the number of additional multimodal images. More...
int	GetNbFramesToSkip ()
void	SetNbMultiModalImages (int a_nbMultiModalImages)
void	SetTimeStaticFlag (bool a_flag)
void	SetRespStaticFlag (bool a_flag)
void	SetCardStaticFlag (bool a_flag)
void	SetnbFramesToSkip (int a_FramesToSkip)
bool	IsInitialized ()
	Returns true if the object has been initialized. More...
bool	HasMask ()
	Returns true if has an image mask. More...
	oImageDimensionsAndQuantification ()
	~oImageDimensionsAndQuantification ()
void	SetDefault ()
int	CheckParameters ()
int	Initialize ()
void	CheckNumberOfProjectionThreadsConsistencyWithDataFileSize (vDataFile **a2p_DataFile)
int	DealWithBedPositions (vDataFile **a2p_DataFile)
int	ResetQuantificationFactors ()
	If already initialized, set the quantification factors to 1. More...
void	ResetCurrentDynamicIndices ()
int	InitDynamicData (string a_pathTo4DDataSplittingFile, int a_respMotionCorrectionFlag, int a_cardMotionCorrectionFlag, int a_invMotionCorrectionFlag, int a_nbRespGates, int a_nbCardGates)
int	CheckDynamicParameters (int64_t a_nbEvents)
int	DynamicSwitch (int64_t a_currentEventIndex, uint32_t a_currentTime, int a_bed, int a_th)
bool	IsRespMotionEnabled ()
bool	IsCardMotionEnabled ()
bool	IsPMotionEnabled ()
void	SetRespMotionFlagOn ()
void	SetCardMotionFlagOn ()
void	SetPMotionFlagOn ()
int	GetCurrentRespGate (int a_th)
int	GetCurrentCardGate (int a_th)
int	GetPMotionFirstIndexForFrame (int a_fr)
int	GetPMotionLastIndexForFrame (int a_fr)
int	GetNb1stMotImgsForLMS (int a_fr)
int	GetNb2ndMotImgsForLMS ()
FLTNB	GetListPMotionWeightInFrameForLMS (int a_fr, int a_pmsset)
int	GetCurrentRespImage (int a_th)
int	GetCurrentCardImage (int a_th)
int	GetCurrentTimeFrame (int a_th)
int	GetCurrentPMotionIndex (int a_th)
int	GetNbIPatMotionSubsets ()
HPFLTNB	GetdurationPerGate (int a_fr, int a_respGate)
bool	GateDurationProvided ()
int	GetDynRecoType ()
void	SetVerbose (int a_verbose)
int	GetNbThreadsForProjection ()
int	GetNbThreadsForImageComputation ()
int	GetNbThreadsMax ()
int	SetNbThreads (const string &a_nbThreads)
void	SetMPIRankAndSize (int a_mpiRank, int a_mpiSize)
int	GetMPISize ()
int	GetMPIRank ()
int	GetNbBeds ()
void	SetNbBeds (int a_nbBeds)
FLTNB	GetBedPosition (int a_bedIndex)
bool	GetProvidedBedPositionFlag ()
int	GetNbTimeFrames ()
int	GetNbTimeBasisFunctions ()
FLTNB	GetTimeBasisCoefficient (int a_timeBasisFunction, int a_timeFrame)
FLTNB	GetFrameDurationInSec (int a_bed, int a_frame)
FLTNB	GetFrameTimeStartInSec (int a_bed, int a_frame)
FLTNB	GetFrameTimeStopInSec (int a_bed, int a_frame)
FLTNB	GetFinalTimeStopInSec (int a_bed)
uint32_t	GetFrameDurationInMs (int a_bed, int a_frame)
uint32_t	GetFrameTimeStartInMs (int a_bed, int a_frame)
uint32_t	GetFrameTimeStopInMs (int a_bed, int a_frame)
uint32_t	GetFinalTimeStopInMs (int a_bed)
uint32_t *	GetFramesTimeStartsArray (int a_bed)
uint32_t *	GetFramesTimeStopArray (int a_bed)
uint32_t *	GetFramesTimeDurationsArray (int a_bed)
void	SetFrames (const string &a_frameList)
void	SetNbTimeBasisFunctions (int a_nbTimeBasisFunctions)
void	SetTimeBasisFunctions (FLTNB **a_m2pTimeBasisFunctions)
void	SetRespBasisFunctions (FLTNB **a_m2pRespBasisFunctions)
void	SetCardBasisFunctions (FLTNB **a_m2pCardBasisFunctions)
int	SetAcquisitionTime (int a_bed, FLTNB a_timeStartInSec, FLTNB a_durationInSec, string a_GateListDurationsInSec)
bool	GetTimeStaticFlag ()
int	GetNbRespGates ()
int	GetNbRespBasisFunctions ()
FLTNB	GetRespBasisCoefficient (int a_respBasisFunction, int a_respGate)
void	SetNbRespGates (int a_nbRespGates)
void	SetNbRespBasisFunctions (int a_nbRespBasisFunctions)
void	SetRespBasisFunctionsFile (const string &a_respBasisFunctionsFile)
bool	GetRespStaticFlag ()
int	GetNbCardGates ()
int	GetNbCardBasisFunctions ()
FLTNB	GetCardBasisCoefficient (int a_cardBasisFunction, int a_cardGate)
void	SetNbCardGates (int a_nbCardGates)
void	SetNbCardBasisFunctions (int a_nbCardBasisFunctions)
void	SetCardBasisFunctionsFile (const string &a_cardBasisFunctionsFile)
bool	GetCardStaticFlag ()
INTNB	GetNbVoxX ()
INTNB	GetNbVoxY ()
INTNB	GetNbVoxZ ()
INTNB	GetNbVoxXY ()
INTNB	GetNbVoxXYZ ()
INTNB	GetNbVoxDiagonal ()
void	SetNbVoxX (INTNB a_nbVoxX)
void	SetNbVoxY (INTNB a_nbVoxY)
void	SetNbVoxZ (INTNB a_nbVoxZ)
FLTNB	GetVoxSizeX ()
FLTNB	GetVoxSizeY ()
FLTNB	GetVoxSizeZ ()
FLTNB	GetFOVSizeX ()
FLTNB	GetFOVSizeY ()
FLTNB	GetFOVSizeZ ()
void	SetVoxSizeX (FLTNB a_voxSizeX)
void	SetVoxSizeY (FLTNB a_voxSizeY)
void	SetVoxSizeZ (FLTNB a_voxSizeZ)
void	SetFOVSizeX (FLTNB a_fovSizeX)
void	SetFOVSizeY (FLTNB a_fovSizeY)
void	SetFOVSizeZ (FLTNB a_fovSizeZ)
void	SetFOVOutMasking (FLTNB a_fovOutPercent, INTNB a_nbSliceOutMask)
FLTNB	GetFOVOutPercent ()
INTNB	GetNbSliceOutMask ()
int	SetFlipOut (const string &a_flipOut)
bool	GetFlipOutX ()
bool	GetFlipOutY ()
bool	GetFlipOutZ ()
FLTNB	GetOffsetX ()
FLTNB	GetOffsetY ()
FLTNB	GetOffsetZ ()
void	SetOffsetX (FLTNB a_offsetX)
void	SetOffsetY (FLTNB a_offsetY)
void	SetOffsetZ (FLTNB a_offsetZ)
FLTNB	GetQuantificationFactor (int a_bed, int a_frame, int a_respGate, int a_cardGate)
long double	GetLambda ()
int	SetCalibrationFactor (int a_bed, FLTNB a_calibrationFactor)
int	SetPETIsotope (int a_bed, const string &a_isotope)
int	SetSPECTIsotope (int a_bed, const string &a_isotope)
int	SetDynamicSpecificQuantificationFactors (const string &a_quantificationFile)
int	ProcessAndSetMask (FLTNB *ap_maskImage)
bool	IsVoxelMasked (INTNB a_voxIndex)
void	SetIgnoredCorrections (const string &a_ignoredCorrectionsList)
bool	GetIgnoreAttnCorrectionFlag ()
void	SetIgnoreAttnCorrectionFlag (bool a_ignoreAttnCorrectionFlag)
	Set the boolean m_ignoreAttnCorrectionFlag to a_ignoreAttnCorrectionFlag. More...
bool	GetIgnoreNormCorrectionFlag ()
void	SetIgnoreNormCorrectionFlag (bool a_ignoreNormCorrectionFlag)
	Set the boolean m_ignoreNormCorrectionFlag to a_ignoreNormCorrectionFlag. More...
bool	GetIgnoreScatCorrectionFlag ()
void	SetIgnoreScatCorrectionFlag (bool a_ignoreScatCorrectionFlag)
	Set the boolean m_ignoreScatCorrectionFlag to a_ignoreScatCorrectionFlag. More...
bool	GetIgnoreRandCorrectionFlag ()
void	SetIgnoreRandCorrectionFlag (bool a_ignoreRandCorrectionFlag)
	Set the boolean m_ignoreRandCorrectionFlag to a_ignoreRandCorrectionFlag. More...
bool	GetIgnoreDecaCorrectionFlag ()
void	SetIgnoreDecaCorrectionFlag (bool a_ignoreDecaCorrectionFlag)
	Set the boolean m_ignoreDecaCorrectionFlag to a_ignoreDecaCorrectionFlag. More...
bool	GetIgnoreBratCorrectionFlag ()
void	SetIgnoreBratCorrectionFlag (bool a_ignoreBratCorrectionFlag)
	Set the boolean m_ignoreBratCorrectionFlag to a_ignoreBratCorrectionFlag. More...
bool	GetIgnoreFdurCorrectionFlag ()
void	SetIgnoreFdurCorrectionFlag (bool a_ignoreFdurCorrectionFlag)
	Set the boolean m_ignoreFdurCorrectionFlag to a_ignoreFdurCorrectionFlag. More...
bool	GetIgnoreCaliCorrectionFlag ()
void	SetIgnoreCaliCorrectionFlag (bool a_ignoreCaliCorrectionFlag)
	Set the boolean m_ignoreCaliCorrectionFlag to a_ignoreCaliCorrectionFlag. More...
int	GetNbMultiModalImages ()
int	GetNbFramesToSkip ()
void	SetNbMultiModalImages (int a_nbMultiModalImages)
void	SetTimeStaticFlag (bool a_flag)
void	SetRespStaticFlag (bool a_flag)
void	SetCardStaticFlag (bool a_flag)
void	SetnbFramesToSkip (int a_FramesToSkip)
bool	IsInitialized ()
bool	HasMask ()

Private Member Functions
int	InitializeFramingAndQuantification ()
	A function used to initialize the framing and quantification tables. More...
int	InitializeIgnoredCorrections ()
	A function used to initialize the ignored corrections. More...
int	InitializeFramingAndQuantification ()
int	InitializeIgnoredCorrections ()

Private Attributes
oDynamicDataManager *	mp_DynamicDataManager
int	m_nbThreadsForProjection
int	m_nbThreadsForImageComputation
int	m_mpiRank
int	m_mpiSize
int	m_nbBeds
FLTNB *	mp_bedPositions
bool	m_providedBedPosition
string	m_frameList
int	m_nbFramesToSkip
int	m_nbTimeBasisFunctions
int	m_nbTimeFrames
FLTNB **	m2p_timeBasisFunctions
uint32_t **	m2p_frameDurationsInMs
uint32_t **	m2p_frameTimeStartInMs
uint32_t **	m2p_frameTimeStopInMs
bool	m_timeStaticFlag
int	m_dynRecoTypeFlag
FLTNB ***	m3p_quantificationFactors
string	m_ignoredCorrectionsList
bool	m_ignoreAttnCorrectionFlag
bool	m_ignoreNormCorrectionFlag
bool	m_ignoreRandCorrectionFlag
bool	m_ignoreScatCorrectionFlag
bool	m_ignoreDecaCorrectionFlag
bool	m_ignoreBratCorrectionFlag
bool	m_ignoreFdurCorrectionFlag
bool	m_ignoreCaliCorrectionFlag
long double	m_lambda
int	m_nbRespBasisFunctions
int	m_nbRespGates
FLTNB **	m2p_respBasisFunctions
string	m_respBasisFunctionsFile
bool	m_respStaticFlag
int	m_nbCardBasisFunctions
int	m_nbCardGates
FLTNB **	m2p_cardBasisFunctions
string	m_cardBasisFunctionsFile
bool	m_cardStaticFlag
INTNB	m_nbVoxX
INTNB	m_nbVoxY
INTNB	m_nbVoxZ
INTNB	m_nbVoxXY
INTNB	m_nbVoxXYZ
FLTNB	m_voxSizeX
FLTNB	m_voxSizeY
FLTNB	m_voxSizeZ
FLTNB	m_fovSizeX
FLTNB	m_fovSizeY
FLTNB	m_fovSizeZ
FLTNB	m_offsetX
FLTNB	m_offsetY
FLTNB	m_offsetZ
FLTNB	m_fovOutPercent
INTNB	m_nbSliceOutMask
bool	m_flipOutX
bool	m_flipOutY
bool	m_flipOutZ
bool	m_checked
bool	m_initialized
int	m_verbose
int	m_nbMultiModalImages
bool	m_hasMask
bool *	mp_mask

Detailed Description

This class is designed to manage all dimensions and quantification related stuff.

This class gather all dimensions information as well as quantification. It also manages the oDynamicDataManager which itself manages the dynamic data. Most classes in the project have a pointer to this class.

Definition at line 47 of file code/include/image/oImageDimensionsAndQuantification.hh.

Constructor & Destructor Documentation

oImageDimensionsAndQuantification() [1/2]

oImageDimensionsAndQuantification::oImageDimensionsAndQuantification

(

)

The constructor of oImageDimensionsAndQuantification.

This is the default and unique constructor. It does not take any parameter and its role is only to affect default values to each member of the class.

Definition at line 16 of file code/src/image/oImageDimensionsAndQuantification.cc.

~oImageDimensionsAndQuantification() [1/2]

oImageDimensionsAndQuantification::~oImageDimensionsAndQuantification

(

)

The destructor of oImageDimensionsAndQuantification.

This is the default and unique destructor. It does not take any parameter and its role is only to free or delete all structures that were build by this class.

Definition at line 89 of file code/src/image/oImageDimensionsAndQuantification.cc.

oImageDimensionsAndQuantification() [2/2]

oImageDimensionsAndQuantification::oImageDimensionsAndQuantification

(

)

~oImageDimensionsAndQuantification() [2/2]

oImageDimensionsAndQuantification::~oImageDimensionsAndQuantification

(

)

Member Function Documentation

CheckDynamicParameters() [1/2]

int oImageDimensionsAndQuantification::CheckDynamicParameters

(

int64_t

a_nbEvents

)

Definition at line 1474 of file code/src/image/oImageDimensionsAndQuantification.cc.

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CheckDynamicParameters() [2/2]

int oImageDimensionsAndQuantification::CheckDynamicParameters

(

int64_t

a_nbEvents

)

CheckNumberOfProjectionThreadsConsistencyWithDataFileSize() [1/2]

void oImageDimensionsAndQuantification::CheckNumberOfProjectionThreadsConsistencyWithDataFileSize

(

vDataFile **

a2p_DataFile

)

Definition at line 441 of file code/src/image/oImageDimensionsAndQuantification.cc.

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CheckNumberOfProjectionThreadsConsistencyWithDataFileSize() [2/2]

void oImageDimensionsAndQuantification::CheckNumberOfProjectionThreadsConsistencyWithDataFileSize

(

vDataFile **

a2p_DataFile

)

CheckParameters() [1/2]

int oImageDimensionsAndQuantification::CheckParameters

(

)

CheckParameters() [2/2]

int oImageDimensionsAndQuantification::CheckParameters

(

)

A function used to check the parameters settings.

This function does not take any parameter and is used to check that all mandatory members were correctly parameterized.

Returns

An integer reflecting the check status; 0 if no problem, another value otherwise.

Definition at line 279 of file code/src/image/oImageDimensionsAndQuantification.cc.

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DealWithBedPositions() [1/2]

int oImageDimensionsAndQuantification::DealWithBedPositions

(

vDataFile **

a2p_DataFile

)

DealWithBedPositions() [2/2]

int oImageDimensionsAndQuantification::DealWithBedPositions

(

vDataFile **

a2p_DataFile

)

Definition at line 462 of file code/src/image/oImageDimensionsAndQuantification.cc.

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DynamicSwitch() [1/2]

int oImageDimensionsAndQuantification::DynamicSwitch ( int64_t  a_currentEventIndex, uint32_t  a_currentTime, int  a_bed, int  a_th  )

inline

Definition at line 202 of file code/include/image/oImageDimensionsAndQuantification.hh.

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DynamicSwitch() [2/2]

int oImageDimensionsAndQuantification::DynamicSwitch ( int64_t  a_currentEventIndex, uint32_t  a_currentTime, int  a_bed, int  a_th  )

inline

Definition at line 209 of file include/image/oImageDimensionsAndQuantification.hh.

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GateDurationProvided() [1/2]

bool oImageDimensionsAndQuantification::GateDurationProvided ( )

inline

Definition at line 363 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GateDurationProvided() [2/2]

bool oImageDimensionsAndQuantification::GateDurationProvided ( )

inline

Definition at line 370 of file include/image/oImageDimensionsAndQuantification.hh.

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GetBedPosition() [1/2]

FLTNB oImageDimensionsAndQuantification::GetBedPosition ( int  a_bedIndex )

inline

Definition at line 457 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetBedPosition() [2/2]

FLTNB oImageDimensionsAndQuantification::GetBedPosition ( int  a_bedIndex )

inline

Definition at line 464 of file include/image/oImageDimensionsAndQuantification.hh.

GetCardBasisCoefficient() [1/2]

FLTNB oImageDimensionsAndQuantification::GetCardBasisCoefficient ( int  a_cardBasisFunction, int  a_cardGate  )

inline

Definition at line 708 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetCardBasisCoefficient() [2/2]

FLTNB oImageDimensionsAndQuantification::GetCardBasisCoefficient ( int  a_cardBasisFunction, int  a_cardGate  )

inline

Definition at line 715 of file include/image/oImageDimensionsAndQuantification.hh.

GetCardStaticFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetCardStaticFlag ( )

inline

Get the cardiac static flag that says if the reconstruction has only one cardiac gate or not.

Returns

m_cardStaticFlag

Definition at line 736 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetCardStaticFlag() [2/2]

bool oImageDimensionsAndQuantification::GetCardStaticFlag ( )

inline

Definition at line 743 of file include/image/oImageDimensionsAndQuantification.hh.

GetCurrentCardGate() [1/2]

int oImageDimensionsAndQuantification::GetCurrentCardGate ( int  a_th )

inline

Definition at line 263 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentCardGate() [2/2]

int oImageDimensionsAndQuantification::GetCurrentCardGate ( int  a_th )

inline

Definition at line 270 of file include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentCardImage() [1/2]

int oImageDimensionsAndQuantification::GetCurrentCardImage ( int  a_th )

inline

Definition at line 324 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentCardImage() [2/2]

int oImageDimensionsAndQuantification::GetCurrentCardImage ( int  a_th )

inline

Definition at line 331 of file include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentPMotionIndex() [1/2]

int oImageDimensionsAndQuantification::GetCurrentPMotionIndex ( int  a_th )

inline

Definition at line 340 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentPMotionIndex() [2/2]

int oImageDimensionsAndQuantification::GetCurrentPMotionIndex ( int  a_th )

inline

Definition at line 347 of file include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentRespGate() [1/2]

int oImageDimensionsAndQuantification::GetCurrentRespGate ( int  a_th )

inline

Definition at line 255 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentRespGate() [2/2]

int oImageDimensionsAndQuantification::GetCurrentRespGate ( int  a_th )

inline

Definition at line 262 of file include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentRespImage() [1/2]

int oImageDimensionsAndQuantification::GetCurrentRespImage ( int  a_th )

inline

Definition at line 316 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentRespImage() [2/2]

int oImageDimensionsAndQuantification::GetCurrentRespImage ( int  a_th )

inline

Definition at line 323 of file include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentTimeFrame() [1/2]

int oImageDimensionsAndQuantification::GetCurrentTimeFrame ( int  a_th )

inline

Definition at line 332 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetCurrentTimeFrame() [2/2]

int oImageDimensionsAndQuantification::GetCurrentTimeFrame ( int  a_th )

inline

Definition at line 339 of file include/image/oImageDimensionsAndQuantification.hh.

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GetdurationPerGate() [1/2]

HPFLTNB oImageDimensionsAndQuantification::GetdurationPerGate ( int  a_fr, int  a_respGate  )

inline

Definition at line 356 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetdurationPerGate() [2/2]

HPFLTNB oImageDimensionsAndQuantification::GetdurationPerGate ( int  a_fr, int  a_respGate  )

inline

Definition at line 363 of file include/image/oImageDimensionsAndQuantification.hh.

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GetDynRecoType() [1/2]

int oImageDimensionsAndQuantification::GetDynRecoType ( )

inline

Returns

the type of dynamic reconstruction according to the 4DYN_RECON_TYPE module

Definition at line 370 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetDynRecoType() [2/2]

int oImageDimensionsAndQuantification::GetDynRecoType ( )

inline

Definition at line 377 of file include/image/oImageDimensionsAndQuantification.hh.

GetFinalTimeStopInMs() [1/2]

uint32_t oImageDimensionsAndQuantification::GetFinalTimeStopInMs ( int  a_bed )

inline

Definition at line 556 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetFinalTimeStopInMs() [2/2]

uint32_t oImageDimensionsAndQuantification::GetFinalTimeStopInMs ( int  a_bed )

inline

Definition at line 563 of file include/image/oImageDimensionsAndQuantification.hh.

GetFinalTimeStopInSec() [1/2]

FLTNB oImageDimensionsAndQuantification::GetFinalTimeStopInSec ( int  a_bed )

inline

Definition at line 521 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFinalTimeStopInSec() [2/2]

FLTNB oImageDimensionsAndQuantification::GetFinalTimeStopInSec ( int  a_bed )

inline

Definition at line 528 of file include/image/oImageDimensionsAndQuantification.hh.

GetFlipOutX() [1/2]

public inline bool oImageDimensionsAndQuantification::GetFlipOutX ( )

inline

Get the boolean saying if the output image must be flipped along the X axis.

Returns

m_flipOutX

Definition at line 921 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFlipOutX() [2/2]

bool oImageDimensionsAndQuantification::GetFlipOutX ( )

inline

Definition at line 928 of file include/image/oImageDimensionsAndQuantification.hh.

GetFlipOutY() [1/2]

public inline bool oImageDimensionsAndQuantification::GetFlipOutY ( )

inline

Get the boolean saying if the output image must be flipped along the Y axis.

Returns

m_flipOutY

Definition at line 928 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFlipOutY() [2/2]

bool oImageDimensionsAndQuantification::GetFlipOutY ( )

inline

Definition at line 935 of file include/image/oImageDimensionsAndQuantification.hh.

GetFlipOutZ() [1/2]

public inline bool oImageDimensionsAndQuantification::GetFlipOutZ ( )

inline

Get the boolean saying if the output image must be flipped along the Z axis.

Returns

m_flipOutZ

Definition at line 935 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFlipOutZ() [2/2]

bool oImageDimensionsAndQuantification::GetFlipOutZ ( )

inline

Definition at line 942 of file include/image/oImageDimensionsAndQuantification.hh.

GetFOVOutPercent() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetFOVOutPercent ( )

inline

Get the percentage of transaxial unmasked FOV.

Returns

m_fovOutPercent

Definition at line 900 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFOVOutPercent() [2/2]

FLTNB oImageDimensionsAndQuantification::GetFOVOutPercent ( )

inline

Definition at line 907 of file include/image/oImageDimensionsAndQuantification.hh.

GetFOVSizeX() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetFOVSizeX ( )

inline

Get the size of the field-of-view along the X axis, in mm.

Returns

m_fovSizeX

Definition at line 829 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetFOVSizeX() [2/2]

FLTNB oImageDimensionsAndQuantification::GetFOVSizeX ( )

inline

Definition at line 836 of file include/image/oImageDimensionsAndQuantification.hh.

GetFOVSizeY() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetFOVSizeY ( )

inline

Get the size of the field-of-view along the Y axis, in mm.

Returns

m_fovSizeY

Definition at line 836 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetFOVSizeY() [2/2]

FLTNB oImageDimensionsAndQuantification::GetFOVSizeY ( )

inline

Definition at line 843 of file include/image/oImageDimensionsAndQuantification.hh.

GetFOVSizeZ() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetFOVSizeZ ( )

inline

Get the size of the field-of-view along the Z axis, in mm.

Returns

m_fovSizeZ

Definition at line 843 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetFOVSizeZ() [2/2]

FLTNB oImageDimensionsAndQuantification::GetFOVSizeZ ( )

inline

Definition at line 850 of file include/image/oImageDimensionsAndQuantification.hh.

GetFrameDurationInMs() [1/2]

uint32_t oImageDimensionsAndQuantification::GetFrameDurationInMs ( int  a_bed, int  a_frame  )

inline

Definition at line 530 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFrameDurationInMs() [2/2]

uint32_t oImageDimensionsAndQuantification::GetFrameDurationInMs ( int  a_bed, int  a_frame  )

inline

Definition at line 537 of file include/image/oImageDimensionsAndQuantification.hh.

GetFrameDurationInSec() [1/2]

FLTNB oImageDimensionsAndQuantification::GetFrameDurationInSec ( int  a_bed, int  a_frame  )

inline

Definition at line 495 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFrameDurationInSec() [2/2]

FLTNB oImageDimensionsAndQuantification::GetFrameDurationInSec ( int  a_bed, int  a_frame  )

inline

Definition at line 502 of file include/image/oImageDimensionsAndQuantification.hh.

GetFramesTimeDurationsArray() [1/2]

uint32_t* oImageDimensionsAndQuantification::GetFramesTimeDurationsArray ( int  a_bed )

inline

Definition at line 580 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetFramesTimeDurationsArray() [2/2]

uint32_t* oImageDimensionsAndQuantification::GetFramesTimeDurationsArray ( int  a_bed )

inline

Definition at line 587 of file include/image/oImageDimensionsAndQuantification.hh.

GetFramesTimeStartsArray() [1/2]

uint32_t* oImageDimensionsAndQuantification::GetFramesTimeStartsArray ( int  a_bed )

inline

Definition at line 564 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFramesTimeStartsArray() [2/2]

uint32_t* oImageDimensionsAndQuantification::GetFramesTimeStartsArray ( int  a_bed )

inline

Definition at line 571 of file include/image/oImageDimensionsAndQuantification.hh.

GetFramesTimeStopArray() [1/2]

uint32_t* oImageDimensionsAndQuantification::GetFramesTimeStopArray ( int  a_bed )

inline

Definition at line 572 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFramesTimeStopArray() [2/2]

uint32_t* oImageDimensionsAndQuantification::GetFramesTimeStopArray ( int  a_bed )

inline

Definition at line 579 of file include/image/oImageDimensionsAndQuantification.hh.

GetFrameTimeStartInMs() [1/2]

uint32_t oImageDimensionsAndQuantification::GetFrameTimeStartInMs ( int  a_bed, int  a_frame  )

inline

Definition at line 539 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFrameTimeStartInMs() [2/2]

uint32_t oImageDimensionsAndQuantification::GetFrameTimeStartInMs ( int  a_bed, int  a_frame  )

inline

Definition at line 546 of file include/image/oImageDimensionsAndQuantification.hh.

GetFrameTimeStartInSec() [1/2]

FLTNB oImageDimensionsAndQuantification::GetFrameTimeStartInSec ( int  a_bed, int  a_frame  )

inline

Definition at line 504 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFrameTimeStartInSec() [2/2]

FLTNB oImageDimensionsAndQuantification::GetFrameTimeStartInSec ( int  a_bed, int  a_frame  )

inline

Definition at line 511 of file include/image/oImageDimensionsAndQuantification.hh.

GetFrameTimeStopInMs() [1/2]

uint32_t oImageDimensionsAndQuantification::GetFrameTimeStopInMs ( int  a_bed, int  a_frame  )

inline

Definition at line 548 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFrameTimeStopInMs() [2/2]

uint32_t oImageDimensionsAndQuantification::GetFrameTimeStopInMs ( int  a_bed, int  a_frame  )

inline

Definition at line 555 of file include/image/oImageDimensionsAndQuantification.hh.

GetFrameTimeStopInSec() [1/2]

FLTNB oImageDimensionsAndQuantification::GetFrameTimeStopInSec ( int  a_bed, int  a_frame  )

inline

Definition at line 513 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetFrameTimeStopInSec() [2/2]

FLTNB oImageDimensionsAndQuantification::GetFrameTimeStopInSec ( int  a_bed, int  a_frame  )

inline

Definition at line 520 of file include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreAttnCorrectionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetIgnoreAttnCorrectionFlag ( )

inline

Get the boolean that says if the attenuation correction is ignored or not.

Returns

m_ignoreAttnCorrectionFlag

Definition at line 1044 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetIgnoreAttnCorrectionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetIgnoreAttnCorrectionFlag ( )

inline

Definition at line 1051 of file include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreBratCorrectionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetIgnoreBratCorrectionFlag ( )

inline

Get the boolean that says if the branching ratio correction is ignored or not.

Returns

m_ignoreBratCorrectionFlag

Definition at line 1079 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreBratCorrectionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetIgnoreBratCorrectionFlag ( )

inline

Definition at line 1121 of file include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreCaliCorrectionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetIgnoreCaliCorrectionFlag ( )

inline

Get the boolean that says if the calibration correction is ignored or not.

Returns

m_ignoreCaliCorrectionFlag

Definition at line 1093 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreCaliCorrectionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetIgnoreCaliCorrectionFlag ( )

inline

Definition at line 1149 of file include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreDecaCorrectionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetIgnoreDecaCorrectionFlag ( )

inline

Get the boolean that says if the decay correction is ignored or not.

Returns

m_ignoreDecaCorrectionFlag

Definition at line 1072 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreDecaCorrectionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetIgnoreDecaCorrectionFlag ( )

inline

Definition at line 1107 of file include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreFdurCorrectionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetIgnoreFdurCorrectionFlag ( )

inline

Get the boolean that says if the frame duration correction is ignored or not.

Returns

m_ignoreFdurCorrectionFlag

Definition at line 1086 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreFdurCorrectionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetIgnoreFdurCorrectionFlag ( )

inline

Definition at line 1135 of file include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreNormCorrectionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetIgnoreNormCorrectionFlag ( )

inline

Get the boolean that says if the normalization correction is ignored or not.

Returns

m_ignoreNormCorrectionFlag

Definition at line 1051 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetIgnoreNormCorrectionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetIgnoreNormCorrectionFlag ( )

inline

Definition at line 1065 of file include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreRandCorrectionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetIgnoreRandCorrectionFlag ( )

inline

Get the boolean that says if the random correction is ignored or not.

Returns

m_ignoreRandCorrectionFlag

Definition at line 1065 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetIgnoreRandCorrectionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetIgnoreRandCorrectionFlag ( )

inline

Definition at line 1093 of file include/image/oImageDimensionsAndQuantification.hh.

GetIgnoreScatCorrectionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetIgnoreScatCorrectionFlag ( )

inline

Get the boolean that says if the scatter correction is ignored or not.

Returns

m_ignoreScatCorrectionFlag

Definition at line 1058 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetIgnoreScatCorrectionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetIgnoreScatCorrectionFlag ( )

inline

Definition at line 1079 of file include/image/oImageDimensionsAndQuantification.hh.

GetLambda() [1/2]

public inline long double oImageDimensionsAndQuantification::GetLambda ( )

inline

Returns

decay factor compute as log2/half-life

Definition at line 992 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetLambda() [2/2]

long double oImageDimensionsAndQuantification::GetLambda ( )

inline

Definition at line 999 of file include/image/oImageDimensionsAndQuantification.hh.

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GetListPMotionWeightInFrameForLMS() [1/2]

FLTNB oImageDimensionsAndQuantification::GetListPMotionWeightInFrameForLMS ( int  a_fr, int  a_pmsset  )

inline

Definition at line 305 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetListPMotionWeightInFrameForLMS() [2/2]

FLTNB oImageDimensionsAndQuantification::GetListPMotionWeightInFrameForLMS ( int  a_fr, int  a_pmsset  )

inline

Definition at line 312 of file include/image/oImageDimensionsAndQuantification.hh.

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GetMPIRank() [1/2]

public inline int oImageDimensionsAndQuantification::GetMPIRank ( )

inline

Get the MPI instance number (the rank)

Returns

m_mpiRank

Definition at line 435 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetMPIRank() [2/2]

int oImageDimensionsAndQuantification::GetMPIRank ( )

inline

Definition at line 442 of file include/image/oImageDimensionsAndQuantification.hh.

GetMPISize() [1/2]

public inline int oImageDimensionsAndQuantification::GetMPISize ( )

inline

Get the MPI size (the number of MPI instances)

Returns

m_mpiSize

Definition at line 428 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetMPISize() [2/2]

int oImageDimensionsAndQuantification::GetMPISize ( )

inline

Definition at line 435 of file include/image/oImageDimensionsAndQuantification.hh.

GetNb1stMotImgsForLMS() [1/2]

int oImageDimensionsAndQuantification::GetNb1stMotImgsForLMS ( int  a_fr )

inline

Definition at line 289 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNb1stMotImgsForLMS() [2/2]

int oImageDimensionsAndQuantification::GetNb1stMotImgsForLMS ( int  a_fr )

inline

Definition at line 296 of file include/image/oImageDimensionsAndQuantification.hh.

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GetNb2ndMotImgsForLMS() [1/2]

public inline int oImageDimensionsAndQuantification::GetNb2ndMotImgsForLMS ( )

inline

call the eponym function from the oDynamicDataManager object

Returns

the number of cardiac images for sensitivity

Definition at line 296 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNb2ndMotImgsForLMS() [2/2]

int oImageDimensionsAndQuantification::GetNb2ndMotImgsForLMS ( )

inline

Definition at line 303 of file include/image/oImageDimensionsAndQuantification.hh.

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GetNbBeds() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbBeds ( )

inline

Get the number of bed positions.

Returns

m_nbBeds

Definition at line 442 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbBeds() [2/2]

int oImageDimensionsAndQuantification::GetNbBeds ( )

inline

Definition at line 449 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbCardBasisFunctions() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbCardBasisFunctions ( )

inline

Get the number of cardiac basis functions.

Returns

m_nbCardBasisFunctions

Definition at line 699 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbCardBasisFunctions() [2/2]

int oImageDimensionsAndQuantification::GetNbCardBasisFunctions ( )

inline

Definition at line 706 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbCardGates() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbCardGates ( )

inline

Get the number of cardiac gates.

Returns

m_nbCardGates

Definition at line 692 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbCardGates() [2/2]

int oImageDimensionsAndQuantification::GetNbCardGates ( )

inline

Definition at line 699 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbFramesToSkip() [1/2]

int oImageDimensionsAndQuantification::GetNbFramesToSkip ( )

inline

Definition at line 1107 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbFramesToSkip() [2/2]

int oImageDimensionsAndQuantification::GetNbFramesToSkip ( )

inline

Definition at line 1170 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbIPatMotionSubsets() [1/2]

int oImageDimensionsAndQuantification::GetNbIPatMotionSubsets ( )

inline

call the eponym function from the oDynamicDataManager object

Returns

the total number of involuntary patient motion triggers

Definition at line 348 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbIPatMotionSubsets() [2/2]

int oImageDimensionsAndQuantification::GetNbIPatMotionSubsets ( )

inline

Definition at line 355 of file include/image/oImageDimensionsAndQuantification.hh.

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GetNbMultiModalImages() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbMultiModalImages ( )

inline

Get the number of additional multimodal images.

Returns

m_nbMultiModalImages

Definition at line 1100 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbMultiModalImages() [2/2]

int oImageDimensionsAndQuantification::GetNbMultiModalImages ( )

inline

Definition at line 1163 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbRespBasisFunctions() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbRespBasisFunctions ( )

inline

Get the number of respiratory basis functions.

Returns

m_nbRespBasisFunctions

Definition at line 648 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetNbRespBasisFunctions() [2/2]

int oImageDimensionsAndQuantification::GetNbRespBasisFunctions ( )

inline

Definition at line 655 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbRespGates() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbRespGates ( )

inline

Get the number of respiratory gates.

Returns

m_nbRespGates

Definition at line 641 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbRespGates() [2/2]

int oImageDimensionsAndQuantification::GetNbRespGates ( )

inline

Definition at line 648 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbSliceOutMask() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetNbSliceOutMask ( )

inline

Get the number of extrem slices that will be masked at each side.

Returns

m_nbSliceOutMask

Definition at line 907 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbSliceOutMask() [2/2]

INTNB oImageDimensionsAndQuantification::GetNbSliceOutMask ( )

inline

Definition at line 914 of file include/image/oImageDimensionsAndQuantification.hh.

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GetNbThreadsForImageComputation() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbThreadsForImageComputation ( )

inline

Get the number of threads used for image operations.

Returns

m_nbThreadsForImageComputation

Definition at line 396 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbThreadsForImageComputation() [2/2]

int oImageDimensionsAndQuantification::GetNbThreadsForImageComputation ( )

inline

Definition at line 403 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbThreadsForProjection() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbThreadsForProjection ( )

inline

Get the number of threads used for projections.

Returns

m_nbThreadsForProjection

Definition at line 389 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetNbThreadsForProjection() [2/2]

int oImageDimensionsAndQuantification::GetNbThreadsForProjection ( )

inline

Definition at line 396 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbThreadsMax() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbThreadsMax ( )

inline

Get the maximum between the number of threads used for projections and image operations.

Returns

max(m_nbThreadsForProjection,m_nbThreadsForImageComputation)

Definition at line 403 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbThreadsMax() [2/2]

int oImageDimensionsAndQuantification::GetNbThreadsMax ( )

inline

Definition at line 410 of file include/image/oImageDimensionsAndQuantification.hh.

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GetNbTimeBasisFunctions() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbTimeBasisFunctions ( )

inline

Get the number of time basis functions.

Returns

m_nbTimeBasisFunctions

Definition at line 477 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetNbTimeBasisFunctions() [2/2]

int oImageDimensionsAndQuantification::GetNbTimeBasisFunctions ( )

inline

Definition at line 484 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbTimeFrames() [1/2]

public inline int oImageDimensionsAndQuantification::GetNbTimeFrames ( )

inline

Get the number of time frames.

Returns

m_nbTimeFrames

Definition at line 470 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetNbTimeFrames() [2/2]

int oImageDimensionsAndQuantification::GetNbTimeFrames ( )

inline

Definition at line 477 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbVoxDiagonal() [1/2]

public inline INTNB oImageDimensionsAndQuantification::GetNbVoxDiagonal ( )

inline

Get an estimation of the number of voxels along the image diagonal.

Returns

An estimation of the number of voxels along the image diagonal

Definition at line 778 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbVoxDiagonal() [2/2]

INTNB oImageDimensionsAndQuantification::GetNbVoxDiagonal ( )

inline

Definition at line 785 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbVoxX() [1/2]

public inline INTNB oImageDimensionsAndQuantification::GetNbVoxX ( )

inline

Get the number of voxels along the X axis.

Returns

m_nbVoxX

Definition at line 743 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbVoxX() [2/2]

INTNB oImageDimensionsAndQuantification::GetNbVoxX ( )

inline

Definition at line 750 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbVoxXY() [1/2]

public inline INTNB oImageDimensionsAndQuantification::GetNbVoxXY ( )

inline

Get the number of voxels in a slice.

Returns

m_nbVoxXY

Definition at line 764 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbVoxXY() [2/2]

INTNB oImageDimensionsAndQuantification::GetNbVoxXY ( )

inline

Definition at line 771 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbVoxXYZ() [1/2]

public inline INTNB oImageDimensionsAndQuantification::GetNbVoxXYZ ( )

inline

Get the total number of voxels.

Returns

m_nbVoxXYZ

Definition at line 771 of file code/include/image/oImageDimensionsAndQuantification.hh.

GetNbVoxXYZ() [2/2]

INTNB oImageDimensionsAndQuantification::GetNbVoxXYZ ( )

inline

Definition at line 778 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbVoxY() [1/2]

public inline INTNB oImageDimensionsAndQuantification::GetNbVoxY ( )

inline

Get the number of voxels along the Y axis.

Returns

m_nbVoxY

Definition at line 750 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbVoxY() [2/2]

INTNB oImageDimensionsAndQuantification::GetNbVoxY ( )

inline

Definition at line 757 of file include/image/oImageDimensionsAndQuantification.hh.

GetNbVoxZ() [1/2]

public inline INTNB oImageDimensionsAndQuantification::GetNbVoxZ ( )

inline

Get the number of voxels along the Z axis.

Returns

m_nbVoxZ

Definition at line 757 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetNbVoxZ() [2/2]

INTNB oImageDimensionsAndQuantification::GetNbVoxZ ( )

inline

Definition at line 764 of file include/image/oImageDimensionsAndQuantification.hh.

GetOffsetX() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetOffsetX ( )

inline

Get the image offset along the X axis, in mm.

Returns

m_offsetX

Definition at line 942 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetOffsetX() [2/2]

FLTNB oImageDimensionsAndQuantification::GetOffsetX ( )

inline

Definition at line 949 of file include/image/oImageDimensionsAndQuantification.hh.

GetOffsetY() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetOffsetY ( )

inline

Get the image offset along the Y axis, in mm.

Returns

m_offsetY

Definition at line 949 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetOffsetY() [2/2]

FLTNB oImageDimensionsAndQuantification::GetOffsetY ( )

inline

Definition at line 956 of file include/image/oImageDimensionsAndQuantification.hh.

GetOffsetZ() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetOffsetZ ( )

inline

Get the image offset along the Z axis, in mm.

Returns

m_offsetZ

Definition at line 956 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetOffsetZ() [2/2]

FLTNB oImageDimensionsAndQuantification::GetOffsetZ ( )

inline

Definition at line 963 of file include/image/oImageDimensionsAndQuantification.hh.

GetPMotionFirstIndexForFrame() [1/2]

int oImageDimensionsAndQuantification::GetPMotionFirstIndexForFrame ( int  a_fr )

inline

Definition at line 271 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetPMotionFirstIndexForFrame() [2/2]

int oImageDimensionsAndQuantification::GetPMotionFirstIndexForFrame ( int  a_fr )

inline

Definition at line 278 of file include/image/oImageDimensionsAndQuantification.hh.

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GetPMotionLastIndexForFrame() [1/2]

int oImageDimensionsAndQuantification::GetPMotionLastIndexForFrame ( int  a_fr )

inline

Definition at line 280 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetPMotionLastIndexForFrame() [2/2]

int oImageDimensionsAndQuantification::GetPMotionLastIndexForFrame ( int  a_fr )

inline

Definition at line 287 of file include/image/oImageDimensionsAndQuantification.hh.

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GetProvidedBedPositionFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetProvidedBedPositionFlag ( )

inline

Say if the bed relative position was provided from the datafile or not.

Returns

m_providedBedPosition

Definition at line 464 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetProvidedBedPositionFlag() [2/2]

bool oImageDimensionsAndQuantification::GetProvidedBedPositionFlag ( )

inline

Definition at line 471 of file include/image/oImageDimensionsAndQuantification.hh.

GetQuantificationFactor() [1/2]

FLTNB oImageDimensionsAndQuantification::GetQuantificationFactor	(	int	a_bed,
		int	a_frame,
		int	a_respGate,
		int	a_cardGate
	)

Definition at line 1220 of file code/src/image/oImageDimensionsAndQuantification.cc.

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GetQuantificationFactor() [2/2]

FLTNB oImageDimensionsAndQuantification::GetQuantificationFactor	(	int	a_bed,
		int	a_frame,
		int	a_respGate,
		int	a_cardGate
	)

GetRespBasisCoefficient() [1/2]

FLTNB oImageDimensionsAndQuantification::GetRespBasisCoefficient ( int  a_respBasisFunction, int  a_respGate  )

inline

Definition at line 657 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetRespBasisCoefficient() [2/2]

FLTNB oImageDimensionsAndQuantification::GetRespBasisCoefficient ( int  a_respBasisFunction, int  a_respGate  )

inline

Definition at line 664 of file include/image/oImageDimensionsAndQuantification.hh.

GetRespStaticFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetRespStaticFlag ( )

inline

Get the respiratory static flag that says if the reconstruction has only one respiratory gate or not.

Returns

m_respStaticFlag

Definition at line 685 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetRespStaticFlag() [2/2]

bool oImageDimensionsAndQuantification::GetRespStaticFlag ( )

inline

Definition at line 692 of file include/image/oImageDimensionsAndQuantification.hh.

GetTimeBasisCoefficient() [1/2]

FLTNB oImageDimensionsAndQuantification::GetTimeBasisCoefficient ( int  a_timeBasisFunction, int  a_timeFrame  )

inline

Definition at line 486 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetTimeBasisCoefficient() [2/2]

FLTNB oImageDimensionsAndQuantification::GetTimeBasisCoefficient ( int  a_timeBasisFunction, int  a_timeFrame  )

inline

Definition at line 493 of file include/image/oImageDimensionsAndQuantification.hh.

GetTimeStaticFlag() [1/2]

public inline bool oImageDimensionsAndQuantification::GetTimeStaticFlag ( )

inline

Get the time static flag that says if the reconstruction has only one frame or not.

Returns

m_timeStaticFlag

Definition at line 634 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetTimeStaticFlag() [2/2]

bool oImageDimensionsAndQuantification::GetTimeStaticFlag ( )

inline

Definition at line 641 of file include/image/oImageDimensionsAndQuantification.hh.

GetVoxSizeX() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetVoxSizeX ( )

inline

Get the voxel's size along the X axis, in mm.

Returns

m_voxSizeX

Definition at line 808 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetVoxSizeX() [2/2]

FLTNB oImageDimensionsAndQuantification::GetVoxSizeX ( )

inline

Definition at line 815 of file include/image/oImageDimensionsAndQuantification.hh.

GetVoxSizeY() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetVoxSizeY ( )

inline

Get the voxel's size along the Y axis, in mm.

Returns

m_voxSizeY

Definition at line 815 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetVoxSizeY() [2/2]

FLTNB oImageDimensionsAndQuantification::GetVoxSizeY ( )

inline

Definition at line 822 of file include/image/oImageDimensionsAndQuantification.hh.

GetVoxSizeZ() [1/2]

public inline FLTNB oImageDimensionsAndQuantification::GetVoxSizeZ ( )

inline

Get the voxel's size along the Z axis, in mm.

Returns

m_voxSizeZ

Definition at line 822 of file code/include/image/oImageDimensionsAndQuantification.hh.

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GetVoxSizeZ() [2/2]

FLTNB oImageDimensionsAndQuantification::GetVoxSizeZ ( )

inline

Definition at line 829 of file include/image/oImageDimensionsAndQuantification.hh.

HasMask() [1/2]

public inline bool oImageDimensionsAndQuantification::HasMask ( )

inline

Returns true if has an image mask.

Definition at line 1153 of file code/include/image/oImageDimensionsAndQuantification.hh.

HasMask() [2/2]

bool oImageDimensionsAndQuantification::HasMask ( )

inline

Definition at line 1216 of file include/image/oImageDimensionsAndQuantification.hh.

InitDynamicData() [1/2]

int oImageDimensionsAndQuantification::InitDynamicData	(	string	a_pathTo4DDataSplittingFile,
		int	a_respMotionCorrectionFlag,
		int	a_cardMotionCorrectionFlag,
		int	a_invMotionCorrectionFlag,
		int	a_nbRespGates,
		int	a_nbCardGates
	)

Definition at line 1439 of file code/src/image/oImageDimensionsAndQuantification.cc.

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InitDynamicData() [2/2]

int oImageDimensionsAndQuantification::InitDynamicData	(	string	a_pathTo4DDataSplittingFile,
		int	a_respMotionCorrectionFlag,
		int	a_cardMotionCorrectionFlag,
		int	a_invMotionCorrectionFlag,
		int	a_nbRespGates,
		int	a_nbCardGates
	)

Initialize() [1/2]

int oImageDimensionsAndQuantification::Initialize

(

)

Initialize() [2/2]

int oImageDimensionsAndQuantification::Initialize

(

)

A function used to initialize all that is needed.

This function does not take any parameter and is used to initialize everything that should be initialized. It initializes image dimensions, dynamic basis functions and quantification factors.

Returns

An integer reflecting the initialization status; 0 if no problem, another value otherwise.

Definition at line 335 of file code/src/image/oImageDimensionsAndQuantification.cc.

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InitializeFramingAndQuantification() [1/2]

int oImageDimensionsAndQuantification::InitializeFramingAndQuantification ( )

private

A function used to initialize the framing and quantification tables.

This function is called by the Initialize() function.

Returns

An integer reflecting the initialization status; 0 if no problem, another value otherwise.

Definition at line 537 of file code/src/image/oImageDimensionsAndQuantification.cc.

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InitializeFramingAndQuantification() [2/2]

int oImageDimensionsAndQuantification::InitializeFramingAndQuantification ( )

private

InitializeIgnoredCorrections() [1/2]

int oImageDimensionsAndQuantification::InitializeIgnoredCorrections ( )

private

A function used to initialize the ignored corrections.

This function is called by the Initialize() function. It parses the ignored correction string (correction keywords separated by commas) and set the associated boolean members

Returns

An integer reflecting the initialization status; 0 if no problem, another value otherwise.

Definition at line 891 of file code/src/image/oImageDimensionsAndQuantification.cc.

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InitializeIgnoredCorrections() [2/2]

int oImageDimensionsAndQuantification::InitializeIgnoredCorrections ( )

private

IsCardMotionEnabled() [1/2]

bool oImageDimensionsAndQuantification::IsCardMotionEnabled ( )

inline

Definition at line 218 of file code/include/image/oImageDimensionsAndQuantification.hh.

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IsCardMotionEnabled() [2/2]

bool oImageDimensionsAndQuantification::IsCardMotionEnabled ( )

inline

Definition at line 225 of file include/image/oImageDimensionsAndQuantification.hh.

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IsInitialized() [1/2]

public inline bool oImageDimensionsAndQuantification::IsInitialized ( )

inline

Returns true if the object has been initialized.

Definition at line 1148 of file code/include/image/oImageDimensionsAndQuantification.hh.

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IsInitialized() [2/2]

bool oImageDimensionsAndQuantification::IsInitialized ( )

inline

Definition at line 1211 of file include/image/oImageDimensionsAndQuantification.hh.

IsPMotionEnabled() [1/2]

bool oImageDimensionsAndQuantification::IsPMotionEnabled ( )

inline

Definition at line 225 of file code/include/image/oImageDimensionsAndQuantification.hh.

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IsPMotionEnabled() [2/2]

bool oImageDimensionsAndQuantification::IsPMotionEnabled ( )

inline

Definition at line 232 of file include/image/oImageDimensionsAndQuantification.hh.

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IsRespMotionEnabled() [1/2]

bool oImageDimensionsAndQuantification::IsRespMotionEnabled ( )

inline

Definition at line 211 of file code/include/image/oImageDimensionsAndQuantification.hh.

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IsRespMotionEnabled() [2/2]

bool oImageDimensionsAndQuantification::IsRespMotionEnabled ( )

inline

Definition at line 218 of file include/image/oImageDimensionsAndQuantification.hh.

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IsVoxelMasked() [1/2]

bool oImageDimensionsAndQuantification::IsVoxelMasked

(

INTNB

a_voxIndex

)

Definition at line 1514 of file code/src/image/oImageDimensionsAndQuantification.cc.

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IsVoxelMasked() [2/2]

bool oImageDimensionsAndQuantification::IsVoxelMasked

(

INTNB

a_voxIndex

)

ProcessAndSetMask() [1/2]

int oImageDimensionsAndQuantification::ProcessAndSetMask

(

FLTNB *

ap_maskImage

)

Definition at line 1484 of file code/src/image/oImageDimensionsAndQuantification.cc.

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ProcessAndSetMask() [2/2]

int oImageDimensionsAndQuantification::ProcessAndSetMask

(

FLTNB *

ap_maskImage

)

ResetCurrentDynamicIndices() [1/2]

public inline void oImageDimensionsAndQuantification::ResetCurrentDynamicIndices ( )

inline

Call the eponym function from the oDynamicDataManager class using the member object.

Definition at line 169 of file code/include/image/oImageDimensionsAndQuantification.hh.

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ResetCurrentDynamicIndices() [2/2]

void oImageDimensionsAndQuantification::ResetCurrentDynamicIndices ( )

inline

Definition at line 176 of file include/image/oImageDimensionsAndQuantification.hh.

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ResetQuantificationFactors()

int oImageDimensionsAndQuantification::ResetQuantificationFactors

(

)

If already initialized, set the quantification factors to 1.

Returns

0 if success, another value otherwise.

Definition at line 1112 of file src/image/oImageDimensionsAndQuantification.cc.

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SetAcquisitionTime() [1/2]

int oImageDimensionsAndQuantification::SetAcquisitionTime	(	int	a_bed,
		FLTNB	a_timeStartInSec,
		FLTNB	a_durationInSec,
		string	a_GateListDurationsInSec
	)

Definition at line 948 of file code/src/image/oImageDimensionsAndQuantification.cc.

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SetAcquisitionTime() [2/2]

int oImageDimensionsAndQuantification::SetAcquisitionTime	(	int	a_bed,
		FLTNB	a_timeStartInSec,
		FLTNB	a_durationInSec,
		string	a_GateListDurationsInSec
	)

SetCalibrationFactor() [1/2]

int oImageDimensionsAndQuantification::SetCalibrationFactor	(	int	a_bed,
		FLTNB	a_calibrationFactor
	)

Definition at line 1070 of file code/src/image/oImageDimensionsAndQuantification.cc.

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SetCalibrationFactor() [2/2]

int oImageDimensionsAndQuantification::SetCalibrationFactor	(	int	a_bed,
		FLTNB	a_calibrationFactor
	)

SetCardBasisFunctions() [1/2]

void oImageDimensionsAndQuantification::SetCardBasisFunctions ( FLTNB **  a_m2pCardBasisFunctions )

inline

Definition at line 616 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetCardBasisFunctions() [2/2]

void oImageDimensionsAndQuantification::SetCardBasisFunctions ( FLTNB **  a_m2pCardBasisFunctions )

inline

Definition at line 623 of file include/image/oImageDimensionsAndQuantification.hh.

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SetCardBasisFunctionsFile() [1/2]

void oImageDimensionsAndQuantification::SetCardBasisFunctionsFile ( const string &  a_cardBasisFunctionsFile )

inline

Definition at line 729 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetCardBasisFunctionsFile() [2/2]

void oImageDimensionsAndQuantification::SetCardBasisFunctionsFile ( const string &  a_cardBasisFunctionsFile )

inline

Definition at line 736 of file include/image/oImageDimensionsAndQuantification.hh.

SetCardMotionFlagOn() [1/2]

public inline void oImageDimensionsAndQuantification::SetCardMotionFlagOn ( )

inline

Call the eponym function from the oDynamicDataManager class using the member object.

Definition at line 241 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetCardMotionFlagOn() [2/2]

void oImageDimensionsAndQuantification::SetCardMotionFlagOn ( )

inline

Definition at line 248 of file include/image/oImageDimensionsAndQuantification.hh.

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SetCardStaticFlag() [1/2]

void oImageDimensionsAndQuantification::SetCardStaticFlag ( bool  a_flag )

inline

Definition at line 1135 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetCardStaticFlag() [2/2]

void oImageDimensionsAndQuantification::SetCardStaticFlag ( bool  a_flag )

inline

Definition at line 1198 of file include/image/oImageDimensionsAndQuantification.hh.

SetDefault() [1/2]

void oImageDimensionsAndQuantification::SetDefault

(

)

A function used to set number of threads and MPI instances to 1 and bypass the CheckParameters() function.

The m_checked flag is set to true

Definition at line 261 of file code/src/image/oImageDimensionsAndQuantification.cc.

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SetDefault() [2/2]

void oImageDimensionsAndQuantification::SetDefault

(

)

SetDynamicSpecificQuantificationFactors() [1/2]

int oImageDimensionsAndQuantification::SetDynamicSpecificQuantificationFactors

(

const string &

a_quantificationFile

)

Definition at line 1111 of file code/src/image/oImageDimensionsAndQuantification.cc.

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SetDynamicSpecificQuantificationFactors() [2/2]

int oImageDimensionsAndQuantification::SetDynamicSpecificQuantificationFactors

(

const string &

a_quantificationFile

)

SetFlipOut() [1/2]

int oImageDimensionsAndQuantification::SetFlipOut

(

const string &

a_flipOut

)

Definition at line 134 of file code/src/image/oImageDimensionsAndQuantification.cc.

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SetFlipOut() [2/2]

int oImageDimensionsAndQuantification::SetFlipOut

(

const string &

a_flipOut

)

SetFOVOutMasking() [1/2]

void oImageDimensionsAndQuantification::SetFOVOutMasking ( FLTNB  a_fovOutPercent, INTNB  a_nbSliceOutMask  )

inline

Definition at line 893 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetFOVOutMasking() [2/2]

void oImageDimensionsAndQuantification::SetFOVOutMasking ( FLTNB  a_fovOutPercent, INTNB  a_nbSliceOutMask  )

inline

Definition at line 900 of file include/image/oImageDimensionsAndQuantification.hh.

SetFOVSizeX() [1/2]

void oImageDimensionsAndQuantification::SetFOVSizeX ( FLTNB  a_fovSizeX )

inline

Definition at line 871 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetFOVSizeX() [2/2]

void oImageDimensionsAndQuantification::SetFOVSizeX ( FLTNB  a_fovSizeX )

inline

Definition at line 878 of file include/image/oImageDimensionsAndQuantification.hh.

SetFOVSizeY() [1/2]

void oImageDimensionsAndQuantification::SetFOVSizeY ( FLTNB  a_fovSizeY )

inline

Definition at line 878 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetFOVSizeY() [2/2]

void oImageDimensionsAndQuantification::SetFOVSizeY ( FLTNB  a_fovSizeY )

inline

Definition at line 885 of file include/image/oImageDimensionsAndQuantification.hh.

SetFOVSizeZ() [1/2]

void oImageDimensionsAndQuantification::SetFOVSizeZ ( FLTNB  a_fovSizeZ )

inline

Definition at line 885 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetFOVSizeZ() [2/2]

void oImageDimensionsAndQuantification::SetFOVSizeZ ( FLTNB  a_fovSizeZ )

inline

Definition at line 892 of file include/image/oImageDimensionsAndQuantification.hh.

SetFrames() [1/2]

void oImageDimensionsAndQuantification::SetFrames ( const string &  a_frameList )

inline

Definition at line 587 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetFrames() [2/2]

void oImageDimensionsAndQuantification::SetFrames ( const string &  a_frameList )

inline

Definition at line 594 of file include/image/oImageDimensionsAndQuantification.hh.

SetIgnoreAttnCorrectionFlag()

public inline void oImageDimensionsAndQuantification::SetIgnoreAttnCorrectionFlag ( bool  a_ignoreAttnCorrectionFlag )

inline

Set the boolean m_ignoreAttnCorrectionFlag to a_ignoreAttnCorrectionFlag.

Parameters

bool	a_ignoreAttnCorrectionFlag

Definition at line 1058 of file include/image/oImageDimensionsAndQuantification.hh.

SetIgnoreBratCorrectionFlag()

public inline void oImageDimensionsAndQuantification::SetIgnoreBratCorrectionFlag ( bool  a_ignoreBratCorrectionFlag )

inline

Set the boolean m_ignoreBratCorrectionFlag to a_ignoreBratCorrectionFlag.

Parameters

bool	a_ignoreBratCorrectionFlag

Definition at line 1128 of file include/image/oImageDimensionsAndQuantification.hh.

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SetIgnoreCaliCorrectionFlag()

public inline void oImageDimensionsAndQuantification::SetIgnoreCaliCorrectionFlag ( bool  a_ignoreCaliCorrectionFlag )

inline

Set the boolean m_ignoreCaliCorrectionFlag to a_ignoreCaliCorrectionFlag.

Parameters

bool	a_ignoreCaliCorrectionFlag

Definition at line 1156 of file include/image/oImageDimensionsAndQuantification.hh.

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SetIgnoredCorrections() [1/2]

void oImageDimensionsAndQuantification::SetIgnoredCorrections ( const string &  a_ignoredCorrectionsList )

inline

Definition at line 1037 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetIgnoredCorrections() [2/2]

void oImageDimensionsAndQuantification::SetIgnoredCorrections ( const string &  a_ignoredCorrectionsList )

inline

Definition at line 1044 of file include/image/oImageDimensionsAndQuantification.hh.

SetIgnoreDecaCorrectionFlag()

public inline void oImageDimensionsAndQuantification::SetIgnoreDecaCorrectionFlag ( bool  a_ignoreDecaCorrectionFlag )

inline

Set the boolean m_ignoreDecaCorrectionFlag to a_ignoreDecaCorrectionFlag.

Parameters

bool	a_ignoreDecaCorrectionFlag

Definition at line 1114 of file include/image/oImageDimensionsAndQuantification.hh.

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SetIgnoreFdurCorrectionFlag()

public inline void oImageDimensionsAndQuantification::SetIgnoreFdurCorrectionFlag ( bool  a_ignoreFdurCorrectionFlag )

inline

Set the boolean m_ignoreFdurCorrectionFlag to a_ignoreFdurCorrectionFlag.

Parameters

bool	a_ignoreFdurCorrectionFlag

Definition at line 1142 of file include/image/oImageDimensionsAndQuantification.hh.

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SetIgnoreNormCorrectionFlag()

public inline void oImageDimensionsAndQuantification::SetIgnoreNormCorrectionFlag ( bool  a_ignoreNormCorrectionFlag )

inline

Set the boolean m_ignoreNormCorrectionFlag to a_ignoreNormCorrectionFlag.

Parameters

bool	a_ignoreNormCorrectionFlag

Definition at line 1072 of file include/image/oImageDimensionsAndQuantification.hh.

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SetIgnoreRandCorrectionFlag()

public inline void oImageDimensionsAndQuantification::SetIgnoreRandCorrectionFlag ( bool  a_ignoreRandCorrectionFlag )

inline

Set the boolean m_ignoreRandCorrectionFlag to a_ignoreRandCorrectionFlag.

Parameters

bool	a_ignoreRandCorrectionFlag

Definition at line 1100 of file include/image/oImageDimensionsAndQuantification.hh.

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SetIgnoreScatCorrectionFlag()

public inline void oImageDimensionsAndQuantification::SetIgnoreScatCorrectionFlag ( bool  a_ignoreScatCorrectionFlag )

inline

Set the boolean m_ignoreScatCorrectionFlag to a_ignoreScatCorrectionFlag.

Parameters

bool	a_ignoreScatCorrectionFlag

Definition at line 1086 of file include/image/oImageDimensionsAndQuantification.hh.

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SetMPIRankAndSize() [1/2]

void oImageDimensionsAndQuantification::SetMPIRankAndSize ( int  a_mpiRank, int  a_mpiSize  )

inline

Definition at line 421 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetMPIRankAndSize() [2/2]

void oImageDimensionsAndQuantification::SetMPIRankAndSize ( int  a_mpiRank, int  a_mpiSize  )

inline

Definition at line 428 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbBeds() [1/2]

void oImageDimensionsAndQuantification::SetNbBeds ( int  a_nbBeds )

inline

Definition at line 449 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbBeds() [2/2]

void oImageDimensionsAndQuantification::SetNbBeds ( int  a_nbBeds )

inline

Definition at line 456 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbCardBasisFunctions() [1/2]

void oImageDimensionsAndQuantification::SetNbCardBasisFunctions ( int  a_nbCardBasisFunctions )

inline

Definition at line 722 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbCardBasisFunctions() [2/2]

void oImageDimensionsAndQuantification::SetNbCardBasisFunctions ( int  a_nbCardBasisFunctions )

inline

Definition at line 729 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbCardGates() [1/2]

void oImageDimensionsAndQuantification::SetNbCardGates ( int  a_nbCardGates )

inline

Definition at line 715 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbCardGates() [2/2]

void oImageDimensionsAndQuantification::SetNbCardGates ( int  a_nbCardGates )

inline

Definition at line 722 of file include/image/oImageDimensionsAndQuantification.hh.

SetnbFramesToSkip() [1/2]

void oImageDimensionsAndQuantification::SetnbFramesToSkip ( int  a_FramesToSkip )

inline

Definition at line 1142 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetnbFramesToSkip() [2/2]

void oImageDimensionsAndQuantification::SetnbFramesToSkip ( int  a_FramesToSkip )

inline

Definition at line 1205 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbMultiModalImages() [1/2]

void oImageDimensionsAndQuantification::SetNbMultiModalImages ( int  a_nbMultiModalImages )

inline

Definition at line 1114 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbMultiModalImages() [2/2]

void oImageDimensionsAndQuantification::SetNbMultiModalImages ( int  a_nbMultiModalImages )

inline

Definition at line 1177 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbRespBasisFunctions() [1/2]

void oImageDimensionsAndQuantification::SetNbRespBasisFunctions ( int  a_nbRespBasisFunctions )

inline

Definition at line 671 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbRespBasisFunctions() [2/2]

void oImageDimensionsAndQuantification::SetNbRespBasisFunctions ( int  a_nbRespBasisFunctions )

inline

Definition at line 678 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbRespGates() [1/2]

void oImageDimensionsAndQuantification::SetNbRespGates ( int  a_nbRespGates )

inline

Definition at line 664 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbRespGates() [2/2]

void oImageDimensionsAndQuantification::SetNbRespGates ( int  a_nbRespGates )

inline

Definition at line 671 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbThreads() [1/2]

int oImageDimensionsAndQuantification::SetNbThreads

(

const string &

a_nbThreads

)

Definition at line 203 of file code/src/image/oImageDimensionsAndQuantification.cc.

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SetNbThreads() [2/2]

int oImageDimensionsAndQuantification::SetNbThreads

(

const string &

a_nbThreads

)

SetNbTimeBasisFunctions() [1/2]

void oImageDimensionsAndQuantification::SetNbTimeBasisFunctions ( int  a_nbTimeBasisFunctions )

inline

Definition at line 595 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbTimeBasisFunctions() [2/2]

void oImageDimensionsAndQuantification::SetNbTimeBasisFunctions ( int  a_nbTimeBasisFunctions )

inline

Definition at line 602 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbVoxX() [1/2]

void oImageDimensionsAndQuantification::SetNbVoxX ( INTNB  a_nbVoxX )

inline

Definition at line 787 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbVoxX() [2/2]

void oImageDimensionsAndQuantification::SetNbVoxX ( INTNB  a_nbVoxX )

inline

Definition at line 794 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbVoxY() [1/2]

void oImageDimensionsAndQuantification::SetNbVoxY ( INTNB  a_nbVoxY )

inline

Definition at line 794 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbVoxY() [2/2]

void oImageDimensionsAndQuantification::SetNbVoxY ( INTNB  a_nbVoxY )

inline

Definition at line 801 of file include/image/oImageDimensionsAndQuantification.hh.

SetNbVoxZ() [1/2]

void oImageDimensionsAndQuantification::SetNbVoxZ ( INTNB  a_nbVoxZ )

inline

Definition at line 801 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetNbVoxZ() [2/2]

void oImageDimensionsAndQuantification::SetNbVoxZ ( INTNB  a_nbVoxZ )

inline

Definition at line 808 of file include/image/oImageDimensionsAndQuantification.hh.

SetOffsetX() [1/2]

void oImageDimensionsAndQuantification::SetOffsetX ( FLTNB  a_offsetX )

inline

Definition at line 963 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetOffsetX() [2/2]

void oImageDimensionsAndQuantification::SetOffsetX ( FLTNB  a_offsetX )

inline

Definition at line 970 of file include/image/oImageDimensionsAndQuantification.hh.

SetOffsetY() [1/2]

void oImageDimensionsAndQuantification::SetOffsetY ( FLTNB  a_offsetY )

inline

Definition at line 970 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetOffsetY() [2/2]

void oImageDimensionsAndQuantification::SetOffsetY ( FLTNB  a_offsetY )

inline

Definition at line 977 of file include/image/oImageDimensionsAndQuantification.hh.

SetOffsetZ() [1/2]

void oImageDimensionsAndQuantification::SetOffsetZ ( FLTNB  a_offsetZ )

inline

Definition at line 977 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetOffsetZ() [2/2]

void oImageDimensionsAndQuantification::SetOffsetZ ( FLTNB  a_offsetZ )

inline

Definition at line 984 of file include/image/oImageDimensionsAndQuantification.hh.

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SetPETIsotope() [1/2]

int oImageDimensionsAndQuantification::SetPETIsotope	(	int	a_bed,
		const string &	a_isotope
	)

Definition at line 1257 of file code/src/image/oImageDimensionsAndQuantification.cc.

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SetPETIsotope() [2/2]

int oImageDimensionsAndQuantification::SetPETIsotope	(	int	a_bed,
		const string &	a_isotope
	)

SetPMotionFlagOn() [1/2]

public inline void oImageDimensionsAndQuantification::SetPMotionFlagOn ( )

inline

Call the eponym function from the oDynamicDataManager class using the member object.

Definition at line 247 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetPMotionFlagOn() [2/2]

void oImageDimensionsAndQuantification::SetPMotionFlagOn ( )

inline

Definition at line 254 of file include/image/oImageDimensionsAndQuantification.hh.

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SetRespBasisFunctions() [1/2]

void oImageDimensionsAndQuantification::SetRespBasisFunctions ( FLTNB **  a_m2pRespBasisFunctions )

inline

Definition at line 609 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetRespBasisFunctions() [2/2]

void oImageDimensionsAndQuantification::SetRespBasisFunctions ( FLTNB **  a_m2pRespBasisFunctions )

inline

Definition at line 616 of file include/image/oImageDimensionsAndQuantification.hh.

SetRespBasisFunctionsFile() [1/2]

void oImageDimensionsAndQuantification::SetRespBasisFunctionsFile ( const string &  a_respBasisFunctionsFile )

inline

Definition at line 678 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetRespBasisFunctionsFile() [2/2]

void oImageDimensionsAndQuantification::SetRespBasisFunctionsFile ( const string &  a_respBasisFunctionsFile )

inline

Definition at line 685 of file include/image/oImageDimensionsAndQuantification.hh.

SetRespMotionFlagOn() [1/2]

public inline void oImageDimensionsAndQuantification::SetRespMotionFlagOn ( )

inline

Call the eponym function from the oDynamicDataManager class using the member object.

Definition at line 235 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetRespMotionFlagOn() [2/2]

void oImageDimensionsAndQuantification::SetRespMotionFlagOn ( )

inline

Definition at line 242 of file include/image/oImageDimensionsAndQuantification.hh.

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SetRespStaticFlag() [1/2]

void oImageDimensionsAndQuantification::SetRespStaticFlag ( bool  a_flag )

inline

Definition at line 1128 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetRespStaticFlag() [2/2]

void oImageDimensionsAndQuantification::SetRespStaticFlag ( bool  a_flag )

inline

Definition at line 1191 of file include/image/oImageDimensionsAndQuantification.hh.

SetSPECTIsotope() [1/2]

int oImageDimensionsAndQuantification::SetSPECTIsotope	(	int	a_bed,
		const string &	a_isotope
	)

Definition at line 1237 of file code/src/image/oImageDimensionsAndQuantification.cc.

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SetSPECTIsotope() [2/2]

int oImageDimensionsAndQuantification::SetSPECTIsotope	(	int	a_bed,
		const string &	a_isotope
	)

SetTimeBasisFunctions() [1/2]

void oImageDimensionsAndQuantification::SetTimeBasisFunctions ( FLTNB **  a_m2pTimeBasisFunctions )

inline

Definition at line 602 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetTimeBasisFunctions() [2/2]

void oImageDimensionsAndQuantification::SetTimeBasisFunctions ( FLTNB **  a_m2pTimeBasisFunctions )

inline

Definition at line 609 of file include/image/oImageDimensionsAndQuantification.hh.

SetTimeStaticFlag() [1/2]

void oImageDimensionsAndQuantification::SetTimeStaticFlag ( bool  a_flag )

inline

Definition at line 1121 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetTimeStaticFlag() [2/2]

void oImageDimensionsAndQuantification::SetTimeStaticFlag ( bool  a_flag )

inline

Definition at line 1184 of file include/image/oImageDimensionsAndQuantification.hh.

SetVerbose() [1/2]

void oImageDimensionsAndQuantification::SetVerbose ( int  a_verbose )

inline

Definition at line 382 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetVerbose() [2/2]

void oImageDimensionsAndQuantification::SetVerbose ( int  a_verbose )

inline

Definition at line 389 of file include/image/oImageDimensionsAndQuantification.hh.

SetVoxSizeX() [1/2]

void oImageDimensionsAndQuantification::SetVoxSizeX ( FLTNB  a_voxSizeX )

inline

Definition at line 850 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetVoxSizeX() [2/2]

void oImageDimensionsAndQuantification::SetVoxSizeX ( FLTNB  a_voxSizeX )

inline

Definition at line 857 of file include/image/oImageDimensionsAndQuantification.hh.

SetVoxSizeY() [1/2]

void oImageDimensionsAndQuantification::SetVoxSizeY ( FLTNB  a_voxSizeY )

inline

Definition at line 857 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetVoxSizeY() [2/2]

void oImageDimensionsAndQuantification::SetVoxSizeY ( FLTNB  a_voxSizeY )

inline

Definition at line 864 of file include/image/oImageDimensionsAndQuantification.hh.

SetVoxSizeZ() [1/2]

void oImageDimensionsAndQuantification::SetVoxSizeZ ( FLTNB  a_voxSizeZ )

inline

Definition at line 864 of file code/include/image/oImageDimensionsAndQuantification.hh.

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SetVoxSizeZ() [2/2]

void oImageDimensionsAndQuantification::SetVoxSizeZ ( FLTNB  a_voxSizeZ )

inline

Definition at line 871 of file include/image/oImageDimensionsAndQuantification.hh.

Member Data Documentation

m2p_cardBasisFunctions

FLTNB ** oImageDimensionsAndQuantification::m2p_cardBasisFunctions

private

The table of cardiac basis functions coefficients

Definition at line 1207 of file code/include/image/oImageDimensionsAndQuantification.hh.

m2p_frameDurationsInMs

uint32_t ** oImageDimensionsAndQuantification::m2p_frameDurationsInMs

private

The table of frame durations, per bed position

Definition at line 1180 of file code/include/image/oImageDimensionsAndQuantification.hh.

m2p_frameTimeStartInMs

uint32_t ** oImageDimensionsAndQuantification::m2p_frameTimeStartInMs

private

The table of frame time start, per bed position

Definition at line 1181 of file code/include/image/oImageDimensionsAndQuantification.hh.

m2p_frameTimeStopInMs

uint32_t ** oImageDimensionsAndQuantification::m2p_frameTimeStopInMs

private

The table of frame time stop, per bed position

Definition at line 1182 of file code/include/image/oImageDimensionsAndQuantification.hh.

m2p_respBasisFunctions

FLTNB ** oImageDimensionsAndQuantification::m2p_respBasisFunctions

private

The table of respiratory basis functions coefficients

Definition at line 1201 of file code/include/image/oImageDimensionsAndQuantification.hh.

m2p_timeBasisFunctions

FLTNB ** oImageDimensionsAndQuantification::m2p_timeBasisFunctions

private

The table of time basis functions coefficients

Definition at line 1179 of file code/include/image/oImageDimensionsAndQuantification.hh.

m3p_quantificationFactors

FLTNB *** oImageDimensionsAndQuantification::m3p_quantificationFactors

private

The table of quantification factors, per bed, per frame, per gate

Definition at line 1187 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_cardBasisFunctionsFile

string oImageDimensionsAndQuantification::m_cardBasisFunctionsFile

private

The file containing the cardiac basis coefficients

Definition at line 1208 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_cardStaticFlag

bool oImageDimensionsAndQuantification::m_cardStaticFlag

private

A boolean saying if no cardiac-basis functions are provided

Definition at line 1209 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_checked

bool oImageDimensionsAndQuantification::m_checked

private

A boolean that says if the function CheckParameters() has been called

Definition at line 1233 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_dynRecoTypeFlag

int oImageDimensionsAndQuantification::m_dynRecoTypeFlag

private

A boolean saying the type of dynamic acquisition to reconstruct

Definition at line 1184 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_flipOutX

bool oImageDimensionsAndQuantification::m_flipOutX

private

A boolean saying if the images must be flipped along the X axis before being saved (default: false)

Definition at line 1229 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_flipOutY

bool oImageDimensionsAndQuantification::m_flipOutY

private

A boolean saying if the images must be flipped along the Y axis before being saved (default: false)

Definition at line 1230 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_flipOutZ

bool oImageDimensionsAndQuantification::m_flipOutZ

private

A boolean saying if the images must be flipped along the Z axis before being saved (default: false)

Definition at line 1231 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_fovOutPercent

FLTNB oImageDimensionsAndQuantification::m_fovOutPercent

private

The percentage of the transaxial field-of-view not masked before saving reconstructed images (default: 0. = none)

Definition at line 1226 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_fovSizeX

FLTNB oImageDimensionsAndQuantification::m_fovSizeX

private

The size of the field-of-view along the X axis, in mm

Definition at line 1219 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_fovSizeY

FLTNB oImageDimensionsAndQuantification::m_fovSizeY

private

The size of the field-of-view along the Y axis, in mm

Definition at line 1220 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_fovSizeZ

FLTNB oImageDimensionsAndQuantification::m_fovSizeZ

private

The size of the field-of-view along the Z axis, in mm

Definition at line 1221 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_frameList

string oImageDimensionsAndQuantification::m_frameList

private

A string containing the list of reconstructed frames

Definition at line 1174 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_hasMask

bool oImageDimensionsAndQuantification::m_hasMask

private

Definition at line 1240 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoreAttnCorrectionFlag

bool oImageDimensionsAndQuantification::m_ignoreAttnCorrectionFlag

private

A boolean saying if the attenuation correction is ignored

Definition at line 1189 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoreBratCorrectionFlag

bool oImageDimensionsAndQuantification::m_ignoreBratCorrectionFlag

private

A boolean saying if the branching ratio correction is ignored

Definition at line 1194 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoreCaliCorrectionFlag

bool oImageDimensionsAndQuantification::m_ignoreCaliCorrectionFlag

private

A boolean saying if the calibration correction is ignored

Definition at line 1196 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoredCorrectionsList

string oImageDimensionsAndQuantification::m_ignoredCorrectionsList

private

The string containing the list of corrections to be ignored

Definition at line 1188 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoreDecaCorrectionFlag

bool oImageDimensionsAndQuantification::m_ignoreDecaCorrectionFlag

private

A boolean saying if the decay correction is ignored

Definition at line 1193 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoreFdurCorrectionFlag

bool oImageDimensionsAndQuantification::m_ignoreFdurCorrectionFlag

private

A boolean saying if the frame duration correction is ignored

Definition at line 1195 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoreNormCorrectionFlag

bool oImageDimensionsAndQuantification::m_ignoreNormCorrectionFlag

private

A boolean saying if the normalization correction is ignored

Definition at line 1190 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoreRandCorrectionFlag

bool oImageDimensionsAndQuantification::m_ignoreRandCorrectionFlag

private

A boolean saying if the random correction is ignored

Definition at line 1191 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_ignoreScatCorrectionFlag

bool oImageDimensionsAndQuantification::m_ignoreScatCorrectionFlag

private

A boolean saying if the scatter correction is ignored

Definition at line 1192 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_initialized

bool oImageDimensionsAndQuantification::m_initialized

private

A boolean that says if the function Initialize() has been called

Definition at line 1235 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_lambda

long double oImageDimensionsAndQuantification::m_lambda

private

log(2.0)/half_life, computed for quantification purposes

Definition at line 1197 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_mpiRank

int oImageDimensionsAndQuantification::m_mpiRank

private

The rank of the MPI instance

Definition at line 1167 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_mpiSize

int oImageDimensionsAndQuantification::m_mpiSize

private

The size of the MPI process (i.e. the number of instances)

Definition at line 1168 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbBeds

int oImageDimensionsAndQuantification::m_nbBeds

private

The number of bed positions simultaneously reconstructed

Definition at line 1170 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbCardBasisFunctions

int oImageDimensionsAndQuantification::m_nbCardBasisFunctions

private

The number of cardiac basis functions

Definition at line 1205 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbCardGates

int oImageDimensionsAndQuantification::m_nbCardGates

private

The number of cardiac gates

Definition at line 1206 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbFramesToSkip

int oImageDimensionsAndQuantification::m_nbFramesToSkip

private

An integer to convey how many frames from an input sequence of images to be skipped, for use with ImageBasedDynamicModel

Definition at line 1175 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbMultiModalImages

int oImageDimensionsAndQuantification::m_nbMultiModalImages

private

The number of additional multimodal images

Definition at line 1238 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbRespBasisFunctions

int oImageDimensionsAndQuantification::m_nbRespBasisFunctions

private

The number of respiratory basis functions

Definition at line 1199 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbRespGates

int oImageDimensionsAndQuantification::m_nbRespGates

private

The number of respiratory gates

Definition at line 1200 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbSliceOutMask

INTNB oImageDimensionsAndQuantification::m_nbSliceOutMask

private

The number of extrem slices to be masked from both sides of the axial FOV before saving reconstruction images (default: 0)

Definition at line 1227 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbThreadsForImageComputation

int oImageDimensionsAndQuantification::m_nbThreadsForImageComputation

private

The number of threads for image operations

Definition at line 1165 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbThreadsForProjection

int oImageDimensionsAndQuantification::m_nbThreadsForProjection

private

The number of threads for projections

Definition at line 1164 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbTimeBasisFunctions

int oImageDimensionsAndQuantification::m_nbTimeBasisFunctions

private

The number of time basis functions

Definition at line 1177 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbTimeFrames

int oImageDimensionsAndQuantification::m_nbTimeFrames

private

The number of time frames

Definition at line 1178 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbVoxX

INTNB oImageDimensionsAndQuantification::m_nbVoxX

private

The number of voxels along the X axis

Definition at line 1211 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbVoxXY

INTNB oImageDimensionsAndQuantification::m_nbVoxXY

private

The number of voxels in a slice

Definition at line 1214 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbVoxXYZ

INTNB oImageDimensionsAndQuantification::m_nbVoxXYZ

private

The total number of voxels

Definition at line 1215 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbVoxY

INTNB oImageDimensionsAndQuantification::m_nbVoxY

private

The number of voxels along the Y axis

Definition at line 1212 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_nbVoxZ

INTNB oImageDimensionsAndQuantification::m_nbVoxZ

private

The number of voxels along the Z axis

Definition at line 1213 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_offsetX

FLTNB oImageDimensionsAndQuantification::m_offsetX

private

The image offset along the X axis, in mm (default: 0.)

Definition at line 1222 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_offsetY

FLTNB oImageDimensionsAndQuantification::m_offsetY

private

The image offset along the Y axis, in mm (default: 0.)

Definition at line 1223 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_offsetZ

FLTNB oImageDimensionsAndQuantification::m_offsetZ

private

The image offset along the Z axis, in mm (default: 0.)

Definition at line 1224 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_providedBedPosition

bool oImageDimensionsAndQuantification::m_providedBedPosition

private

A flag saying if the bed position has been provided from the datafile

Definition at line 1172 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_respBasisFunctionsFile

string oImageDimensionsAndQuantification::m_respBasisFunctionsFile

private

The file containing the respiratory basis coefficients

Definition at line 1202 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_respStaticFlag

bool oImageDimensionsAndQuantification::m_respStaticFlag

private

A boolean saying if no respiratory-basis functions are provided

Definition at line 1203 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_timeStaticFlag

bool oImageDimensionsAndQuantification::m_timeStaticFlag

private

A boolean saying if no time-basis functions are provided

Definition at line 1183 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_verbose

int oImageDimensionsAndQuantification::m_verbose

private

The verbose level

Definition at line 1237 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_voxSizeX

FLTNB oImageDimensionsAndQuantification::m_voxSizeX

private

The voxel's size along the X axis, in mm

Definition at line 1216 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_voxSizeY

FLTNB oImageDimensionsAndQuantification::m_voxSizeY

private

The voxel's size along the Y axis, in mm

Definition at line 1217 of file code/include/image/oImageDimensionsAndQuantification.hh.

m_voxSizeZ

FLTNB oImageDimensionsAndQuantification::m_voxSizeZ

private

The voxel's size along the Z axis, in mm

Definition at line 1218 of file code/include/image/oImageDimensionsAndQuantification.hh.

mp_bedPositions

FLTNB * oImageDimensionsAndQuantification::mp_bedPositions

private

The bed positions used during the reconstruction

Definition at line 1171 of file code/include/image/oImageDimensionsAndQuantification.hh.

mp_DynamicDataManager

oDynamicDataManager * oImageDimensionsAndQuantification::mp_DynamicDataManager

private

oDynamicDataManager object related to dynamic raw data management

Definition at line 1161 of file code/include/image/oImageDimensionsAndQuantification.hh.

mp_mask

bool * oImageDimensionsAndQuantification::mp_mask

private

Mask for voxels: only true voxels will be taken into account for projector coefficients computation (currently 3D - XYZ)

Definition at line 1241 of file code/include/image/oImageDimensionsAndQuantification.hh.

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The documentation for this class was generated from the following files:

• code/include/image/oImageDimensionsAndQuantification.hh
• code/src/image/oImageDimensionsAndQuantification.cc