CASToR  3.2
Tomographic Reconstruction (PET/SPECT/CT)
Public Member Functions | Private Member Functions | Private Attributes | List of all members
oSensitivityGenerator Class Reference

This class is designed to manage the computation of the sensitivity image. More...

#include <oSensitivityGenerator.hh>

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Public Member Functions

 oSensitivityGenerator ()
 The constructor of oSensitivityGenerator. More...
 
 ~oSensitivityGenerator ()
 The destructor of oSensitivityGenerator. More...
 
int CheckParameters ()
 A public function used to check the parameters settings. More...
 
int Initialize ()
 A public function used to initialize the sensitivity generator. More...
 
int Launch ()
 A public function used to launch the sensitivity generator (compute the sensitivity image) More...
 
string GetPathToSensitivityImage ()
 This function return the path to the sensitivity image. More...
 
void SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)
 
void SetImageSpace (oImageSpace *ap_ImageSpace)
 
void SetScanner (vScanner *ap_Scanner)
 
void SetProjectorManager (oProjectorManager *ap_ProjectorManager)
 
void SetImageConvolverManager (oImageConvolverManager *ap_ImageConvolverManager)
 
void SetDeformationManager (oDeformationManager *ap_DeformationManager)
 
void SetDataFile (vDataFile **a2p_DataFile)
 
void SetComputeFromHistogramFlag (bool a_computeFromHistogramFlag)
 
void SetPathToNormalizationFileName (vector< string > ap_pathToNormalizationFileName, bool a_inverseDataFileOrderFlag)
 
void SetPathToAttenuationImage (string a_pathToAttenuationImage)
 
void SetNumberOfAtnGateImages (int a_nbAtnRespGateImages, int a_nbAtnCardGateImages)
 
void SetGPUflag (bool a_flagGPU)
 
void SetVerbose (int a_verboseLevel)
 
 oSensitivityGenerator ()
 
 ~oSensitivityGenerator ()
 
int CheckParameters ()
 
int Initialize ()
 
int Launch ()
 
string GetPathToSensitivityImage ()
 
void SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)
 
void SetImageSpace (oImageSpace *ap_ImageSpace)
 
void SetScanner (vScanner *ap_Scanner)
 
void SetProjectorManager (oProjectorManager *ap_ProjectorManager)
 
void SetImageConvolverManager (oImageConvolverManager *ap_ImageConvolverManager)
 
void SetDeformationManager (oDeformationManager *ap_DeformationManager)
 
void SetDataFile (vDataFile **a2p_DataFile)
 
void SetComputeFromHistogramFlag (bool a_computeFromHistogramFlag)
 
void SetPathToNormalizationFileName (vector< string > ap_pathToNormalizationFileName, bool a_inverseDataFileOrderFlag)
 
void SetPathToAttenuationImage (string a_pathToAttenuationImage)
 
void SetNumberOfAtnGateImages (int a_nbAtnRespGateImages, int a_nbAtnCardGateImages)
 
void SetGPUflag (bool a_flagGPU)
 
void SetVerbose (int a_verboseLevel)
 

Private Member Functions

int InitializeAttenuationFiles ()
 Initialize the attenuation images provided for sensitivity computation. More...
 
int InitializeNormalizationFiles ()
 Initialize the normalization datafiles provided for sensitivity computation. More...
 
int LaunchCPU ()
 Launch the computation of the sensitivity image (CPU version) More...
 
int ComputeSensitivityFromHistogramDataFile (int a_bed)
 
int ComputeSensitivityFromNormalizationFile (int a_bed)
 
int ComputeSensitivityFromScanner (int a_bed)
 
int ProcessThisLine (oProjectionLine *ap_Line, vEvent *ap_Event, int a_bed, int a_frame, int a_respGate, int a_cardGate, int a_thread)
 
int InitializeAttenuationFiles ()
 
int InitializeNormalizationFiles ()
 
int LaunchCPU ()
 
int ComputeSensitivityFromHistogramDataFile (int a_bed)
 
int ComputeSensitivityFromNormalizationFile (int a_bed)
 
int ComputeSensitivityFromScanner (int a_bed)
 
int ProcessThisLine (oProjectionLine *ap_Line, vEvent *ap_Event, int a_bed, int a_frame, int a_respGate, int a_cardGate, int a_thread)
 

Private Attributes

string m_pathToSensitivityImage
 
oImageDimensionsAndQuantificationmp_ImageDimensionsAndQuantification
 
oImageSpacemp_ImageSpace
 
vScannermp_Scanner
 
oProjectorManagermp_ProjectorManager
 
oImageConvolverManagermp_ImageConvolverManager
 
oDeformationManagermp_DeformationManager
 
vDataFile ** m2p_DataFile
 
bool m_computeFromHistogramFlag
 
vector< string > mp_pathToNormalizationFileName
 
bool m_inverseDataFileOrderFlag
 
vDataFile *** m3p_NormalizationDataFile
 
bool m_oneNormalizationFileForAllBeds
 
bool m_oneNormalizationFileForAllFrames
 
string m_pathToAttenuationImage
 
bool m_mumapAttenuationFlag
 
bool m_forwardProjectAttenuation
 
int m_nbAtnRespGateImages
 
int m_nbAtnCardGateImages
 
uint64_t * mp_lineCounter
 
bool m_flagGPU
 
int m_verbose
 
bool m_checked
 
bool m_initialized
 

Detailed Description

This class is designed to manage the computation of the sensitivity image.

The sensitivity computation can be done in two ways:
(i) using a normalization data file if provided, where the loop for computation will be done on all events included in the datafile, with included normalization factors;
(ii) if no normalization file is provided, using a loop on all scanner elements.
A mumap in cm-1 can also be provided in order to include the attenuation correction in the sensitivity image.

Definition at line 33 of file code/include/algorithm/oSensitivityGenerator.hh.

Constructor & Destructor Documentation

◆ oSensitivityGenerator() [1/2]

oSensitivityGenerator::oSensitivityGenerator ( )

The constructor of oSensitivityGenerator.

This is the default and unique constructor. It does not take any parameter and its role is only to affect default values to each member of the class.

Definition at line 17 of file code/src/algorithm/oSensitivityGenerator.cc.

◆ ~oSensitivityGenerator() [1/2]

oSensitivityGenerator::~oSensitivityGenerator ( )

The destructor of oSensitivityGenerator.

This is the default and unique destructor. It does not take any parameter and its role is only to free or delete all structures that were built by this class.

Definition at line 51 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ oSensitivityGenerator() [2/2]

oSensitivityGenerator::oSensitivityGenerator ( )

◆ ~oSensitivityGenerator() [2/2]

oSensitivityGenerator::~oSensitivityGenerator ( )

Member Function Documentation

◆ CheckParameters() [1/2]

int oSensitivityGenerator::CheckParameters ( )

A public function used to check the parameters settings.

This function does not take any parameter and is used to check that all mandatory members were correctly parameterized.

Returns
An integer reflecting the check status; 0 if no problem, another value otherwise.

Definition at line 79 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ CheckParameters() [2/2]

int oSensitivityGenerator::CheckParameters ( )

◆ ComputeSensitivityFromHistogramDataFile() [1/2]

int oSensitivityGenerator::ComputeSensitivityFromHistogramDataFile ( int  a_bed)
private

Definition at line 592 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ ComputeSensitivityFromHistogramDataFile() [2/2]

int oSensitivityGenerator::ComputeSensitivityFromHistogramDataFile ( int  a_bed)
private

◆ ComputeSensitivityFromNormalizationFile() [1/2]

int oSensitivityGenerator::ComputeSensitivityFromNormalizationFile ( int  a_bed)
private

Definition at line 717 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ ComputeSensitivityFromNormalizationFile() [2/2]

int oSensitivityGenerator::ComputeSensitivityFromNormalizationFile ( int  a_bed)
private

◆ ComputeSensitivityFromScanner() [1/2]

int oSensitivityGenerator::ComputeSensitivityFromScanner ( int  a_bed)
private

Definition at line 891 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ ComputeSensitivityFromScanner() [2/2]

int oSensitivityGenerator::ComputeSensitivityFromScanner ( int  a_bed)
private

◆ GetPathToSensitivityImage() [1/2]

string oSensitivityGenerator::GetPathToSensitivityImage ( )

◆ GetPathToSensitivityImage() [2/2]

string oSensitivityGenerator::GetPathToSensitivityImage ( )

This function return the path to the sensitivity image.

Returns
m_pathToSensitivityImage

Definition at line 1300 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ Initialize() [1/2]

int oSensitivityGenerator::Initialize ( )

A public function used to initialize the sensitivity generator.

This function does not take any parameter and is used to initialize everything that should be initialized.

Returns
An integer reflecting the initialization status; 0 if no problem, another value otherwise.

Definition at line 155 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ Initialize() [2/2]

int oSensitivityGenerator::Initialize ( )

◆ InitializeAttenuationFiles() [1/2]

int oSensitivityGenerator::InitializeAttenuationFiles ( )
private

Initialize the attenuation images provided for sensitivity computation.

This function is called by the Initialize() function. It checks and reads the provided attenuation images to be taken into account for sensitivity computation.

Returns
An integer reflecting the initialization status; 0 if no problem, another value otherwise.

Definition at line 408 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ InitializeAttenuationFiles() [2/2]

int oSensitivityGenerator::InitializeAttenuationFiles ( )
private

◆ InitializeNormalizationFiles() [1/2]

int oSensitivityGenerator::InitializeNormalizationFiles ( )
private

Initialize the normalization datafiles provided for sensitivity computation.

This function is called by the Initialize() function. It checks and reads the provided normalization datafiles to be taken into account for sensitivity computation.

Returns
An integer reflecting the initialization status; 0 if no problem, another value otherwise.

Definition at line 223 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ InitializeNormalizationFiles() [2/2]

int oSensitivityGenerator::InitializeNormalizationFiles ( )
private

◆ Launch() [1/2]

int oSensitivityGenerator::Launch ( )

◆ Launch() [2/2]

int oSensitivityGenerator::Launch ( )

A public function used to launch the sensitivity generator (compute the sensitivity image)

This function does not take any parameter and is used to launch the computation of the sensitivity image. In fact, it simply switches between the CPU and GPU versions of the function (which are private).

Returns
An integer reflecting the computation status; 0 if no problem, another value otherwise.

Definition at line 477 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ LaunchCPU() [1/2]

int oSensitivityGenerator::LaunchCPU ( )
private

Launch the computation of the sensitivity image (CPU version)

This function calls either the ComputeSensitivityFromNormalizationFile() or the ComputeSensitivityFromScanner() function based on normalization data files provided or not.
It does the loop over all bed positions.

Returns
An integer reflecting the computation status; 0 if no problem, another value otherwise.

Definition at line 495 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ LaunchCPU() [2/2]

int oSensitivityGenerator::LaunchCPU ( )
private

◆ ProcessThisLine() [1/2]

int oSensitivityGenerator::ProcessThisLine ( oProjectionLine ap_Line,
vEvent ap_Event,
int  a_bed,
int  a_frame,
int  a_respGate,
int  a_cardGate,
int  a_thread 
)
private

◆ ProcessThisLine() [2/2]

int oSensitivityGenerator::ProcessThisLine ( oProjectionLine ap_Line,
vEvent ap_Event,
int  a_bed,
int  a_frame,
int  a_respGate,
int  a_cardGate,
int  a_thread 
)
private

Definition at line 1232 of file code/src/algorithm/oSensitivityGenerator.cc.

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◆ SetComputeFromHistogramFlag() [1/2]

void oSensitivityGenerator::SetComputeFromHistogramFlag ( bool  a_computeFromHistogramFlag)
inline

Definition at line 228 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetComputeFromHistogramFlag() [2/2]

void oSensitivityGenerator::SetComputeFromHistogramFlag ( bool  a_computeFromHistogramFlag)
inline

Definition at line 228 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetDataFile() [1/2]

void oSensitivityGenerator::SetDataFile ( vDataFile **  a2p_DataFile)
inline

Definition at line 221 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetDataFile() [2/2]

void oSensitivityGenerator::SetDataFile ( vDataFile **  a2p_DataFile)
inline

Definition at line 221 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetDeformationManager() [1/2]

void oSensitivityGenerator::SetDeformationManager ( oDeformationManager ap_DeformationManager)
inline

Definition at line 214 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetDeformationManager() [2/2]

void oSensitivityGenerator::SetDeformationManager ( oDeformationManager ap_DeformationManager)
inline

Definition at line 214 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetGPUflag() [1/2]

void oSensitivityGenerator::SetGPUflag ( bool  a_flagGPU)
inline

Definition at line 259 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetGPUflag() [2/2]

void oSensitivityGenerator::SetGPUflag ( bool  a_flagGPU)
inline

Definition at line 259 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetImageConvolverManager() [1/2]

void oSensitivityGenerator::SetImageConvolverManager ( oImageConvolverManager ap_ImageConvolverManager)
inline

Definition at line 207 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetImageConvolverManager() [2/2]

void oSensitivityGenerator::SetImageConvolverManager ( oImageConvolverManager ap_ImageConvolverManager)
inline

Definition at line 207 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetImageDimensionsAndQuantification() [1/2]

void oSensitivityGenerator::SetImageDimensionsAndQuantification ( oImageDimensionsAndQuantification ap_ImageDimensionsAndQuantification)
inline

Definition at line 179 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetImageDimensionsAndQuantification() [2/2]

void oSensitivityGenerator::SetImageDimensionsAndQuantification ( oImageDimensionsAndQuantification ap_ImageDimensionsAndQuantification)
inline

Definition at line 179 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetImageSpace() [1/2]

void oSensitivityGenerator::SetImageSpace ( oImageSpace ap_ImageSpace)
inline

Definition at line 186 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetImageSpace() [2/2]

void oSensitivityGenerator::SetImageSpace ( oImageSpace ap_ImageSpace)
inline

Definition at line 186 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetNumberOfAtnGateImages() [1/2]

void oSensitivityGenerator::SetNumberOfAtnGateImages ( int  a_nbAtnRespGateImages,
int  a_nbAtnCardGateImages 
)
inline

Definition at line 252 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetNumberOfAtnGateImages() [2/2]

void oSensitivityGenerator::SetNumberOfAtnGateImages ( int  a_nbAtnRespGateImages,
int  a_nbAtnCardGateImages 
)
inline

Definition at line 252 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetPathToAttenuationImage() [1/2]

void oSensitivityGenerator::SetPathToAttenuationImage ( string  a_pathToAttenuationImage)
inline

Definition at line 244 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetPathToAttenuationImage() [2/2]

void oSensitivityGenerator::SetPathToAttenuationImage ( string  a_pathToAttenuationImage)
inline

Definition at line 244 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetPathToNormalizationFileName() [1/2]

void oSensitivityGenerator::SetPathToNormalizationFileName ( vector< string >  ap_pathToNormalizationFileName,
bool  a_inverseDataFileOrderFlag 
)
inline

Definition at line 236 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetPathToNormalizationFileName() [2/2]

void oSensitivityGenerator::SetPathToNormalizationFileName ( vector< string >  ap_pathToNormalizationFileName,
bool  a_inverseDataFileOrderFlag 
)
inline

Definition at line 236 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetProjectorManager() [1/2]

void oSensitivityGenerator::SetProjectorManager ( oProjectorManager ap_ProjectorManager)
inline

Definition at line 200 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetProjectorManager() [2/2]

void oSensitivityGenerator::SetProjectorManager ( oProjectorManager ap_ProjectorManager)
inline

Definition at line 200 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetScanner() [1/2]

void oSensitivityGenerator::SetScanner ( vScanner ap_Scanner)
inline

Definition at line 193 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetScanner() [2/2]

void oSensitivityGenerator::SetScanner ( vScanner ap_Scanner)
inline

Definition at line 193 of file code/include/algorithm/oSensitivityGenerator.hh.

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◆ SetVerbose() [1/2]

void oSensitivityGenerator::SetVerbose ( int  a_verboseLevel)
inline

Definition at line 266 of file include/algorithm/oSensitivityGenerator.hh.

◆ SetVerbose() [2/2]

void oSensitivityGenerator::SetVerbose ( int  a_verboseLevel)
inline

Definition at line 266 of file code/include/algorithm/oSensitivityGenerator.hh.

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Member Data Documentation

◆ m2p_DataFile

vDataFile ** oSensitivityGenerator::m2p_DataFile
private

Pointer to the array of vDataFile objects

Definition at line 280 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m3p_NormalizationDataFile

vDataFile *** oSensitivityGenerator::m3p_NormalizationDataFile
private

Pointer to the double array of vDataFile objects for normalization

Definition at line 284 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_checked

bool oSensitivityGenerator::m_checked
private

Boolean that says if the parameters were checked or not

Definition at line 295 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_computeFromHistogramFlag

bool oSensitivityGenerator::m_computeFromHistogramFlag
private

A boolean to specify if the datafile is histogram and that the sensitivity must be computed from it

Definition at line 281 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_flagGPU

bool oSensitivityGenerator::m_flagGPU
private

Do we use GPU or not (default=false)

Definition at line 293 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_forwardProjectAttenuation

bool oSensitivityGenerator::m_forwardProjectAttenuation
private

Flag to say that we need to forward project the provided attenuation map (many conditions for that)

Definition at line 289 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_initialized

bool oSensitivityGenerator::m_initialized
private

Boolean that says if the projector was initialized or not

Definition at line 296 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_inverseDataFileOrderFlag

bool oSensitivityGenerator::m_inverseDataFileOrderFlag
private

Flag to say that the provided normalization data file names order must be reversed

Definition at line 283 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_mumapAttenuationFlag

bool oSensitivityGenerator::m_mumapAttenuationFlag
private

Flag to say if an attenuation image has to been provided

Definition at line 288 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_nbAtnCardGateImages

int oSensitivityGenerator::m_nbAtnCardGateImages
private

Number of attenuation images corresponding to the cardiac gates

Definition at line 291 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_nbAtnRespGateImages

int oSensitivityGenerator::m_nbAtnRespGateImages
private

Number of attenuation images corresponding to the respiratory gates

Definition at line 290 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_oneNormalizationFileForAllBeds

bool oSensitivityGenerator::m_oneNormalizationFileForAllBeds
private

A boolean to specify if only one normalization file has been provided for all beds

Definition at line 285 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_oneNormalizationFileForAllFrames

bool oSensitivityGenerator::m_oneNormalizationFileForAllFrames
private

A boolean to specify if only one normalization file has been provided for all frames

Definition at line 286 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_pathToAttenuationImage

string oSensitivityGenerator::m_pathToAttenuationImage
private

String of the path to the attenuation images

Definition at line 287 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_pathToSensitivityImage

string oSensitivityGenerator::m_pathToSensitivityImage
private

The actual path to the created sensitivity image

Definition at line 267 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ m_verbose

int oSensitivityGenerator::m_verbose
private

Verbosity (default=-1)

Definition at line 294 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ mp_DeformationManager

oDeformationManager * oSensitivityGenerator::mp_DeformationManager
private

Pointer to the Deformation Manager object

Definition at line 279 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ mp_ImageConvolverManager

oImageConvolverManager * oSensitivityGenerator::mp_ImageConvolverManager
private

Pointer to the Image Convolver Manager object

Definition at line 278 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ mp_ImageDimensionsAndQuantification

oImageDimensionsAndQuantification * oSensitivityGenerator::mp_ImageDimensionsAndQuantification
private

◆ mp_ImageSpace

oImageSpace * oSensitivityGenerator::mp_ImageSpace
private

Pointer to the Image Space object

Definition at line 275 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ mp_lineCounter

uint64_t * oSensitivityGenerator::mp_lineCounter
private

Counters of the number of effectively projected lines, 1 per thread

Definition at line 292 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ mp_pathToNormalizationFileName

vector< string > oSensitivityGenerator::mp_pathToNormalizationFileName
private

Vector of normalization file names

Definition at line 282 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ mp_ProjectorManager

oProjectorManager * oSensitivityGenerator::mp_ProjectorManager
private

Pointer to the Projector Manager object

Definition at line 277 of file code/include/algorithm/oSensitivityGenerator.hh.

◆ mp_Scanner

vScanner * oSensitivityGenerator::mp_Scanner
private

Pointer to the Scanner object

Definition at line 276 of file code/include/algorithm/oSensitivityGenerator.hh.


The documentation for this class was generated from the following files: