#include <iIterativeAlgorithm.hh>

Inheritance diagram for iIterativeAlgorithm:

Collaboration diagram for iIterativeAlgorithm:

Public Member Functions
	iIterativeAlgorithm ()

	~iIterativeAlgorithm ()

int	InitSpecificOptions (string a_specificOptions)

	iIterativeAlgorithm ()

	~iIterativeAlgorithm ()

int	InitSpecificOptions (string a_specificOptions)

Public Member Functions inherited from vAlgorithm
	vAlgorithm ()
	vAlgorithm constructor. Initialize the member variables to their default values. More...

virtual	~vAlgorithm ()
	vAlgorithm destructor. More...

int	Run ()
	Just call either the RunCPU or the RunGPU function as asked for. More...

int	RunCPU ()
	Perform the iterative loop of the algorithm. Function designed to be executed on the CPU only. More...

void	SetSaveSensitivityHistoFlag (bool a_saveSensitivityHistoFlag)

void	SetSaveSubsetImageFlag (bool a_saveImageAfterSubsets)

void	SetSaveDynamicBasisCoefficientImages (bool a_saveDynamicBasisCoefficients)

void	SetOptimizerManager (oOptimizerManager *ap_OptimizerManager)

void	SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)

void	SetImageSpace (oImageSpace *ap_ImageSpace)

void	SetProjectorManager (oProjectorManager *ap_ProjectorManager)

void	SetImageConvolverManager (oImageConvolverManager *ap_ImageConvolverManager)

void	SetImageProcessingManager (oImageProcessingManager *ap_ImageProcessingManager)

void	SetDynamicModelManager (oDynamicModelManager *ap_DynamicModelManager)

void	SetDeformationManager (oDeformationManager *ap_DeformationManager)

void	SetDataFile (vDataFile **a2p_DataFile)

void	SetGPUflag (bool a_flagGPU)

void	SetVerbose (int a_verboseLevel)

void	SetNbBeds (int a_nbBeds)

void	SetPathInitImage (string a_pathToInitialImage)

void	SetPathToAttenuationImage (string a_pathToAttenuationImage)

void	SetPathToSensitivityImage (string a_pathToSensitivityImage)

void	SetPathToMultiModalImage (vector< string > a_pathToMultiModalImage)

int	SetNbIterationsAndSubsets (const string &a_nbIterationsSubsets)

int	SetOutputIterations (const string &a_outputIterations)

virtual void	ShowHelpSpecific ()
	Show help for the child algorithm. More...

	vAlgorithm ()

virtual	~vAlgorithm ()

int	Run ()

int	RunCPU ()

void	SetSaveSensitivityHistoFlag (bool a_saveSensitivityHistoFlag)

void	SetSaveSubsetImageFlag (bool a_saveImageAfterSubsets)

void	SetSaveDynamicBasisCoefficientImages (bool a_saveDynamicBasisCoefficients)

void	SetOptimizerManager (oOptimizerManager *ap_OptimizerManager)

void	SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)

void	SetImageSpace (oImageSpace *ap_ImageSpace)

void	SetProjectorManager (oProjectorManager *ap_ProjectorManager)

void	SetImageConvolverManager (oImageConvolverManager *ap_ImageConvolverManager)

void	SetImageProcessingManager (oImageProcessingManager *ap_ImageProcessingManager)

void	SetDynamicModelManager (oDynamicModelManager *ap_DynamicModelManager)

void	SetDeformationManager (oDeformationManager *ap_DeformationManager)

void	SetDataFile (vDataFile **a2p_DataFile)

void	SetGPUflag (bool a_flagGPU)

void	SetVerbose (int a_verboseLevel)

void	SetNbBeds (int a_nbBeds)

void	SetPathInitImage (string a_pathToInitialImage)

void	SetPathToAttenuationImage (string a_pathToAttenuationImage)

void	SetPathToSensitivityImage (string a_pathToSensitivityImage)

void	SetPathToMultiModalImage (vector< string > a_pathToMultiModalImage)

int	SetNbIterationsAndSubsets (const string &a_nbIterationsSubsets)

void	SetNbSkippedIterations (const string &a_skippedIterations)
	Set the number of first iterations to be skipped. More...

int	SetOutputIterations (const string &a_outputIterations)

virtual void	ShowHelpSpecific ()

Protected Member Functions
int	StepBeforeIterationLoop ()
	This function is called at the beginning of the RunCPU function. More...

int	StepAfterIterationLoop ()
	This function is called at the end of the RunCPU function. More...

int	StepBeforeSubsetLoop (int a_iteration)

int	StepAfterSubsetLoop (int a_iteration)

int	StepPreProcessInsideSubsetLoop (int a_iteration, int a_subset)

int	StepPostProcessInsideSubsetLoop (int a_iteration, int a_subset)

int	StepInnerLoopInsideSubsetLoop (int a_iteration, int a_subset, int a_bed)

int	StepImageOutput (int a_iteration, int a_subset=-1)

int	StepBeforeIterationLoop ()
	This function is called at the beginning of the RunCPU function. More...

int	StepAfterIterationLoop ()
	This function is called at the end of the RunCPU function. More...

int	StepBeforeSubsetLoop (int a_iteration)

int	StepAfterSubsetLoop (int a_iteration)

int	StepPreProcessInsideSubsetLoop (int a_iteration, int a_subset)

int	StepPostProcessInsideSubsetLoop (int a_iteration, int a_subset)

int	StepInnerLoopInsideSubsetLoop (int a_iteration, int a_subset, int a_bed)

int	StepImageOutput (int a_iteration, int a_subset=-1)

int	PreOrPostIterationIndependentStep ()
	Perform an additional loop over data as well as the pre and post steps inside subset loop but without considering subsets. More...

Additional Inherited Members
Protected Attributes inherited from vAlgorithm
int	m_nbIterations

int *	mp_nbSubsets

bool *	mp_outputIterations

int	m_verbose

bool	m_flagGPU

oImageDimensionsAndQuantification *	mp_ID

vDataFile **	m2p_DataFile

oProjectorManager *	mp_ProjectorManager

oOptimizerManager *	mp_OptimizerManager

oDeformationManager *	mp_DeformationManager

oDynamicModelManager *	mp_DynamicModelManager

oImageSpace *	mp_ImageSpace

oImageConvolverManager *	mp_ImageConvolverManager

oImageProcessingManager *	mp_ImageProcessingManager

int	m_nbBeds

string	m_pathToInitialImg

string	m_pathToAtnImg

string	m_pathToSensitivityImg

vector< string >	m_pathToMultiModalImg

bool	m_saveSensitivityHistoFlag

bool	m_saveImageAfterSubsets

bool	m_saveDynamicBasisCoefficients

int	m_nbSkippedIterations

Detailed Description

Definition at line 30 of file code/include/algorithm/iIterativeAlgorithm.hh.

Constructor & Destructor Documentation

◆ iIterativeAlgorithm() [1/2]

iIterativeAlgorithm::iIterativeAlgorithm ( )

Definition at line 17 of file code/src/algorithm/iIterativeAlgorithm.cc.

◆ ~iIterativeAlgorithm() [1/2]

iIterativeAlgorithm::~iIterativeAlgorithm ( )

Definition at line 26 of file code/src/algorithm/iIterativeAlgorithm.cc.

◆ iIterativeAlgorithm() [2/2]

iIterativeAlgorithm::iIterativeAlgorithm ( )

◆ ~iIterativeAlgorithm() [2/2]

iIterativeAlgorithm::~iIterativeAlgorithm ( )

Member Function Documentation

◆ InitSpecificOptions() [1/2]

int iIterativeAlgorithm::InitSpecificOptions ( string a_specificOptions )

virtual

Reimplemented from vAlgorithm.

Definition at line 601 of file code/src/algorithm/iIterativeAlgorithm.cc.

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◆ InitSpecificOptions() [2/2]

int iIterativeAlgorithm::InitSpecificOptions ( string a_specificOptions )

virtual

Reimplemented from vAlgorithm.

◆ PreOrPostIterationIndependentStep()

int iIterativeAlgorithm::PreOrPostIterationIndependentStep ( )

protected

Perform an additional loop over data as well as the pre and post steps inside subset loop but without considering subsets.

Returns: 0 if success, positivie value otherwise.

Definition at line 641 of file src/algorithm/iIterativeAlgorithm.cc.

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◆ StepAfterIterationLoop() [1/2]

int iIterativeAlgorithm::StepAfterIterationLoop ( )

protectedvirtual

This function is called at the end of the RunCPU function.

Free Memory for the imageSpace and some managers

Returns: 0 if success, positive value otherwise.

Reimplemented from vAlgorithm.

Definition at line 500 of file code/src/algorithm/iIterativeAlgorithm.cc.

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◆ StepAfterIterationLoop() [2/2]

int iIterativeAlgorithm::StepAfterIterationLoop ( )

protectedvirtual

This function is called at the end of the RunCPU function.

Returns: 0 if success, positive value otherwise.

Reimplemented from vAlgorithm.

◆ StepAfterSubsetLoop() [1/2]

int iIterativeAlgorithm::StepAfterSubsetLoop ( int a_iteration )

protectedvirtual

Reimplemented from vAlgorithm.

Definition at line 474 of file code/src/algorithm/iIterativeAlgorithm.cc.

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◆ StepAfterSubsetLoop() [2/2]

int iIterativeAlgorithm::StepAfterSubsetLoop ( int a_iteration )

protectedvirtual

Reimplemented from vAlgorithm.

◆ StepBeforeIterationLoop() [1/2]

int iIterativeAlgorithm::StepBeforeIterationLoop ( )

protectedvirtual

This function is called at the beginning of the RunCPU function.

Initialization and memory allocation for the imageSpace and some managers

Returns: 0 if success, positive value otherwise.

Reimplemented from vAlgorithm.

Definition at line 35 of file code/src/algorithm/iIterativeAlgorithm.cc.

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◆ StepBeforeIterationLoop() [2/2]

int iIterativeAlgorithm::StepBeforeIterationLoop ( )

protectedvirtual

This function is called at the beginning of the RunCPU function.

Returns: 0 if success, positive value otherwise.

Reimplemented from vAlgorithm.

◆ StepBeforeSubsetLoop() [1/2]

int iIterativeAlgorithm::StepBeforeSubsetLoop ( int a_iteration )

protectedvirtual

Reimplemented from vAlgorithm.

Definition at line 66 of file code/src/algorithm/iIterativeAlgorithm.cc.

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◆ StepBeforeSubsetLoop() [2/2]

int iIterativeAlgorithm::StepBeforeSubsetLoop ( int a_iteration )

protectedvirtual

Reimplemented from vAlgorithm.

◆ StepImageOutput() [1/2]

int iIterativeAlgorithm::StepImageOutput	(	int	a_iteration,
		int	a_subset = `-1`
	)

protectedvirtual

Implements vAlgorithm.

Definition at line 522 of file code/src/algorithm/iIterativeAlgorithm.cc.

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◆ StepImageOutput() [2/2]

int iIterativeAlgorithm::StepImageOutput	(	int	a_iteration,
		int	a_subset = `-1`
	)

protectedvirtual

Implements vAlgorithm.

◆ StepInnerLoopInsideSubsetLoop() [1/2]

int iIterativeAlgorithm::StepInnerLoopInsideSubsetLoop	(	int	a_iteration,
		int	a_subset,
		int	a_bed
	)

protectedvirtual

Implements vAlgorithm.

Definition at line 132 of file code/src/algorithm/iIterativeAlgorithm.cc.

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◆ StepInnerLoopInsideSubsetLoop() [2/2]

int iIterativeAlgorithm::StepInnerLoopInsideSubsetLoop	(	int	a_iteration,
		int	a_subset,
		int	a_bed
	)

protectedvirtual

Implements vAlgorithm.

◆ StepPostProcessInsideSubsetLoop() [1/2]

int iIterativeAlgorithm::StepPostProcessInsideSubsetLoop	(	int	a_iteration,
		int	a_subset
	)

protectedvirtual

Reimplemented from vAlgorithm.

◆ StepPostProcessInsideSubsetLoop() [2/2]

int iIterativeAlgorithm::StepPostProcessInsideSubsetLoop	(	int	a_iteration,
		int	a_subset
	)

protectedvirtual

Reimplemented from vAlgorithm.

Definition at line 379 of file code/src/algorithm/iIterativeAlgorithm.cc.

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◆ StepPreProcessInsideSubsetLoop() [1/2]

int iIterativeAlgorithm::StepPreProcessInsideSubsetLoop	(	int	a_iteration,
		int	a_subset
	)

protectedvirtual

Reimplemented from vAlgorithm.

◆ StepPreProcessInsideSubsetLoop() [2/2]

int iIterativeAlgorithm::StepPreProcessInsideSubsetLoop	(	int	a_iteration,
		int	a_subset
	)

protectedvirtual

Reimplemented from vAlgorithm.

Definition at line 82 of file code/src/algorithm/iIterativeAlgorithm.cc.

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The documentation for this class was generated from the following files:

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ iIterativeAlgorithm() [1/2]

◆ ~iIterativeAlgorithm() [1/2]

◆ iIterativeAlgorithm() [2/2]

◆ ~iIterativeAlgorithm() [2/2]

Member Function Documentation

◆ InitSpecificOptions() [1/2]

◆ InitSpecificOptions() [2/2]

◆ PreOrPostIterationIndependentStep()

◆ StepAfterIterationLoop() [1/2]

◆ StepAfterIterationLoop() [2/2]

◆ StepAfterSubsetLoop() [1/2]

◆ StepAfterSubsetLoop() [2/2]

◆ StepBeforeIterationLoop() [1/2]

◆ StepBeforeIterationLoop() [2/2]

◆ StepBeforeSubsetLoop() [1/2]

◆ StepBeforeSubsetLoop() [2/2]

◆ StepImageOutput() [1/2]

◆ StepImageOutput() [2/2]

◆ StepInnerLoopInsideSubsetLoop() [1/2]

◆ StepInnerLoopInsideSubsetLoop() [2/2]

◆ StepPostProcessInsideSubsetLoop() [1/2]

◆ StepPostProcessInsideSubsetLoop() [2/2]

◆ StepPreProcessInsideSubsetLoop() [1/2]

◆ StepPreProcessInsideSubsetLoop() [2/2]