code/include/optimizer/vOptimizer.hh

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#ifndef VOPTIMIZER_HH
#define VOPTIMIZER_HH 1

#include "gVariables.hh"
#include "oImageDimensionsAndQuantification.hh"
#include "oImageSpace.hh"
#include "vDataFile.hh"
#include "oProjectionLine.hh"
#include "vPenalty.hh"

class vOptimizer
{
  // -------------------------------------------------------------------
  // Constructor & Destructor
  public:
    vOptimizer();
    virtual ~vOptimizer();


  // -------------------------------------------------------------------
  // Public member functions
  public:
    void ShowHelp();
    int CheckParameters();
    int Initialize();
    int UpdateVisitedVoxels();
    int PreDataUpdateStep();
    int PreImageUpdateStep();


  // -------------------------------------------------------------------
  // Virtual public member functions that may be overloaded by specific child optimizers
  public:
    virtual int DataStep1ForwardProjectModel( oProjectionLine* ap_Line, vEvent* ap_Event,
                                              int a_bed, int a_timeFrame, int a_respGate, int a_cardGate,
                                              int a_thread );
    virtual int DataStep2Optional( oProjectionLine* ap_Line, vEvent* ap_Event,
                                   int a_bed, int a_timeFrame, int a_respGate, int a_cardGate,
                                   int a_thread );
    virtual int DataStep3BackwardProjectSensitivity( oProjectionLine* ap_Line, vEvent* ap_Event,
                                                     int a_bed, int a_timeFrame, int a_respGate, int a_cardGate,
                                                     int a_thread );
    virtual int DataStep4Optional( oProjectionLine* ap_Line, vEvent* ap_Event,
                                   int a_bed, int a_timeFrame, int a_respGate, int a_cardGate,
                                   int a_thread );
    virtual int DataStep5ComputeCorrections( oProjectionLine* ap_Line, vEvent* ap_Event,
                                             int a_bed, int a_timeFrame, int a_respGate, int a_cardGate,
                                             int a_thread );
    virtual int DataStep6Optional( oProjectionLine* ap_Line, vEvent* ap_Event,
                                   int a_bed, int a_timeFrame, int a_respGate, int a_cardGate,
                                   int a_thread );
    virtual int DataStep7BackwardProjectCorrections( oProjectionLine* ap_Line, vEvent* ap_Event,
                                                     int a_bed, int a_timeFrame, int a_respGate, int a_cardGate,
                                                     int a_thread );
    virtual int DataStep8ComputeFOM( oProjectionLine* ap_Line, vEvent* ap_Event,
                                     int a_timeFrame, int a_respGate, int a_cardGate,
                                     int a_thread );
    virtual int ImageUpdateStep();


  // -----------------------------------------------------------------------------------------
  // Virtual private member functions that may be overloaded by specific child optimizers
  private:
    virtual int PreDataUpdateSpecificStep();
    virtual int PreImageUpdateSpecificStep();

  // -----------------------------------------------------------------------------------------
  // Pure virtual public member functions that need to be implemented by child optimizers
  public:
    virtual int ReadConfigurationFile( const string& a_configurationFile ) = 0;
    virtual int ReadOptionsList( const string& a_optionsList ) = 0;


  // -----------------------------------------------------------------------------------------
  // Pure virtual private member functions that need to be implemented by child optimizers
  private:
    virtual void ShowHelpSpecific() = 0;
    virtual int CheckSpecificParameters() = 0;
    virtual int InitializeSpecific() = 0;
    virtual int SensitivitySpecificOperations( FLTNB a_data, FLTNB a_forwardModel, FLTNB* ap_weight,
                                               FLTNB a_multiplicativeCorrections, FLTNB a_additiveCorrections, FLTNB a_blankValue,
                                               FLTNB a_quantificationFactor, oProjectionLine* ap_Line ) = 0;
    virtual int DataSpaceSpecificOperations( FLTNB a_data, FLTNB a_forwardModel, FLTNB* ap_backwardValues,
                                             FLTNB a_multiplicativeCorrections, FLTNB a_additiveCorrections, FLTNB a_blankValue,
                                             FLTNB a_quantificationFactor, oProjectionLine* ap_Line ) = 0;
    virtual int ImageSpaceSpecificOperations( FLTNB a_currentImageValue, FLTNB* ap_newImageValue,
                                              FLTNB a_sensitivity, FLTNB* ap_correctionValues, INTNB a_voxel,
                                              int tbf = -1, int rbf = -1, int cbf = -1 ) = 0;


  // -------------------------------------------------------------------
  // Public Get & Set functions
  public:
    inline void SetVerbose(int a_verbose)
           {m_verbose = a_verbose;}
    inline void SetImageDimensionsAndQuantification(oImageDimensionsAndQuantification* ap_ImageDimensionsAndQuantification)
           {mp_ImageDimensionsAndQuantification = ap_ImageDimensionsAndQuantification;}
    inline void SetImageSpace(oImageSpace* ap_ImageSpace)
           {mp_ImageSpace = ap_ImageSpace;}
    inline void SetNbTOFBins(int a_nbTOFBins)
           {m_nbTOFBins = a_nbTOFBins;}
    inline void SetDataMode(int a_dataMode)
           {m_dataMode = a_dataMode;}
    inline void SetDataType(int a_dataType)
           {m_dataType = a_dataType;}
    inline void SetDataSpec(int a_dataSpec)
           {m_dataSpec = a_dataSpec;}
    inline void SetAttenuationImage(FLTNB* ap_attenuationImage, int a_thread)
           {m2p_attenuationImage[a_thread] = ap_attenuationImage;}
    inline void SetFOMFlag(bool a_optimizerFOMFlag)
           {m_optimizerFOMFlag = a_optimizerFOMFlag;}
    inline void SetImageStatFlag(bool a_optimizerImageStatFlag)
           {m_optimizerImageStatFlag = a_optimizerImageStatFlag;}
    inline void SetNumbersOfIterationsAndSubsets(int a_nbIterations, int* ap_nbSubsets)
           {m_nbIterations = a_nbIterations; mp_nbSubsets = ap_nbSubsets;}
    inline void SetCurrentIteration(int a_currentIteration)
           {m_currentIteration = a_currentIteration;}
    inline void SetCurrentSubset(int a_currentSubset)
           {m_currentSubset = a_currentSubset;}
    inline int GetNbBackwardImages()
           {return m_nbBackwardImages;}
    inline FLTNB GetInitialValue()
           {return m_initialValue;}
    inline void SetOptimizerID(const string& a_optimizerID)
           {m_optimizerID = a_optimizerID;}
    inline const string& GetOptimizerID()
           {return m_optimizerID;}
    inline int GetRequiredPenaltyDerivativesOrder()
           {return m_requiredPenaltyDerivativesOrder>0;}
    inline bool GetAcceptPenalty()
           {return m_requiredPenaltyDerivativesOrder>-1;}
    inline void SetPenalty(vPenalty* ap_penalty)
           {mp_Penalty = ap_penalty;}
    inline bool GetNeedGlobalSensitivity()
           {return m_needGlobalSensitivity;}


  // -------------------------------------------------------------------
  // Private member functions
  protected:
    FLTNB ComputeSensitivity( FLTNB**** a4p_sensitivityImage,
                              int a_timeBasisFunction, int a_respBasisFunction, int a_cardBasisFunction,
                              int a_voxel );
    FLTNB ForwardProject( oProjectionLine* ap_Line, FLTNB* ap_image = NULL );
    void BackwardProject( oProjectionLine* ap_Line, FLTNB* ap_image, FLTNB a_value );

  // -------------------------------------------------------------------
  // Data members
  protected:

    string m_optimizerID;                  
    int m_verbose;                         
    int m_nbBackwardImages;                
    int m_nbTOFBins;                       
    FLTNB** m2p_forwardValues;             
    FLTNB*** m3p_backwardValues;           
    FLTNB m_initialValue;                  
    bool m_listmodeCompatibility;          
    bool m_histogramCompatibility;         
    bool m_emissionCompatibility;          
    bool m_transmissionCompatibility;      
    oImageDimensionsAndQuantification* 
      mp_ImageDimensionsAndQuantification; 
    oImageSpace* mp_ImageSpace;            
    int m_dataMode;                        
    int m_dataType;                        
    int m_dataSpec;                        
    FLTNB** m2p_attenuationImage;          
    // Iterations/subsets
    int m_nbIterations;                    
    int* mp_nbSubsets;                     
    int m_currentIteration;                
    int m_currentSubset;                   
    // Optimizer figures-of-merit computation
    bool m_optimizerFOMFlag;               
    HPFLTNB**** m4p_FOMLogLikelihood;      
    HPFLTNB**** m4p_FOMRMSE;               
    uint64_t**** m4p_FOMNbBins;            
    HPFLTNB**** m4p_FOMNbData;             
    HPFLTNB**** m4p_FOMPenalty;            
    // Image update statistics
    bool m_optimizerImageStatFlag;         
    INTNB* mp_imageStatNbVox;              
    FLTNB* mp_imageStatMin;                
    FLTNB* mp_imageStatMax;                
    HPFLTNB* mp_imageStatMean;             
    HPFLTNB* mp_imageStatVariance;         
    HPFLTNB* mp_correctionStatMean;        
    HPFLTNB* mp_correctionStatVariance;    
    // Penalty
    int m_requiredPenaltyDerivativesOrder; 
    vPenalty* mp_Penalty;                  
    bool m_needGlobalSensitivity;          
};


// ----------------------------------------------------------------------
// Part of code that manages the auto declaration of children classes
// ----------------------------------------------------------------------

// Macro for the function that creates the object
#define FUNCTION_OPTIMIZER(CLASS) \
  static vOptimizer *make_optimizer() { return new CLASS(); };

// Macro for the class that links the appropriate function to the map of objects
#define CLASS_OPTIMIZER(NAME,CLASS)                                                           \
  class NAME##OptimizerCreator                                                                \
  {                                                                                           \
    public:                                                                                   \
      NAME##OptimizerCreator()                                                                \
        { sAddonManager::GetInstance()->mp_listOfOptimizers[#NAME] = CLASS::make_optimizer; } \
  };                                                                                          \
  static NAME##OptimizerCreator OptimizerCreator##NAME;

#endif