This class implements the general Markov Random Field kind of penalties. More...

#include <iPenaltyMarkovRandomField.hh>

Inheritance diagram for iPenaltyMarkovRandomField:

Collaboration diagram for iPenaltyMarkovRandomField:

Public Member Functions
	iPenaltyMarkovRandomField ()
	The constructor of iPenaltyMarkovRandomField. More...

	~iPenaltyMarkovRandomField ()
	The destructor of iPenaltyMarkovRandomField. More...

int	ReadConfigurationFile (const string &a_configurationFile)

int	ReadOptionsList (const string &a_optionsList)

int	LocalPreProcessingStep (int a_tbf, int a_rbf, int a_cbf, INTNB a_voxel, int a_th)

FLTNB	ComputePenaltyValue (int a_tbf, int a_rbf, int a_cbf, INTNB a_voxel, int a_th)

FLTNB	ComputeFirstDerivative (int a_tbf, int a_rbf, int a_cbf, INTNB a_voxel, int a_th)

FLTNB	ComputeSecondDerivative (int a_tbf, int a_rbf, int a_cbf, INTNB a_voxel, int a_th)

int	BuildSpecificNeighborhood (INTNB a_voxel, int a_th)

int	GetPotentialType ()

FLTNB *	GetProximityKernel ()

FLTNB *	GetSimilarityFactors (int a_th)

INTNB	GetNeighborhoodMaxNbVoxels ()

INTNB **	GetNeighborhoodIndices ()

	iPenaltyMarkovRandomField ()

	~iPenaltyMarkovRandomField ()

int	ReadConfigurationFile (const string &a_configurationFile)

int	ReadOptionsList (const string &a_optionsList)

int	LocalPreProcessingStep (int a_tbf, int a_rbf, int a_cbf, INTNB a_voxel, int a_th)

FLTNB	ComputePenaltyValue (FLTNB *ap_image, INTNB a_voxel, int a_th)

FLTNB	ComputeFirstDerivative (FLTNB *ap_image, INTNB a_voxel, int a_th)

FLTNB	ComputeSecondDerivative (FLTNB *ap_image, INTNB a_voxel, int a_th)

int	BuildSpecificNeighborhood (INTNB a_voxel, int a_th)

int	GetPotentialType ()

FLTNB *	GetProximityKernel ()

FLTNB *	GetSimilarityFactors (int a_th)

INTNB	GetNeighborhoodMaxNbVoxels ()

INTNB **	GetNeighborhoodIndices ()

Public Member Functions inherited from vPenalty
	vPenalty ()
	The constructor of vPenalty. More...

virtual	~vPenalty ()
	The destructor of vPenalty. More...

void	ShowHelp ()
	A function used to show help about the penalty. More...

int	CheckParameters ()
	A public function used to check the parameters settings. More...

int	Initialize ()
	A public function used to initialize the penalty. More...

virtual int	GlobalPreProcessingStep ()
	A public function computing a global pre-processing step for the penalty. More...

void	SetVerbose (int a_verbose)

void	SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)

void	SetImageSpace (oImageSpace *ap_ImageSpace)

void	SetPenaltyStrength (FLTNB a_penaltyStrength)

FLTNB	GetPenaltyStrength ()
	Get the penalty strength. More...

int	GetPenaltyDerivativesOrder ()
	Get the penalty deratives order. More...

void	SetPenaltyID (const string &a_penaltyID)

const string &	GetPenaltyID ()

	vPenalty ()

virtual	~vPenalty ()

void	ShowHelp ()

int	CheckParameters ()

int	Initialize ()

virtual int	GlobalPreProcessingStep ()

void	SetVerbose (int a_verbose)

void	SetImageDimensionsAndQuantification (oImageDimensionsAndQuantification *ap_ImageDimensionsAndQuantification)

void	SetImageSpace (oImageSpace *ap_ImageSpace)

void	SetDataFile (vDataFile *ap_DataFile)
	Set the image space in use. More...

void	SetPenaltyStrength (FLTNB a_penaltyStrength)

FLTNB	GetPenaltyStrength ()

int	GetPenaltyDerivativesOrder ()

void	SetPenaltyID (const string &a_penaltyID)

const string &	GetPenaltyID ()

Private Member Functions
void	ShowHelpSpecific ()
	A function used to show help about the child penalty. More...

int	CheckSpecificParameters ()
	A private function used to check the parameters settings specific to the child penalty. More...

int	InitializeSpecific ()
	This function is used to initialize specific stuff to the child penalty. More...

int	BuildNeighborhoodKernel ()
	A function used to build the neighborhood kernel. More...

int	BuildProximityFactors ()
	A function used to build the kernel of the proximity factors. More...

int	ComputeSimilarityFactors (int a_tbf, int a_rbf, int a_cbf, INTNB a_voxel, int a_th)

void	ShowHelpSpecific ()
	A function used to show help about the child module. More...

int	CheckSpecificParameters ()
	A private function used to check the parameters settings specific to the child penalty. More...

int	InitializeSpecific ()
	A private function used to initialize everything specific to the child penalty. More...

int	BuildNeighborhoodKernel ()

int	BuildProximityFactors ()

int	ComputeSimilarityFactors (int a_tbf, int a_rbf, int a_cbf, INTNB a_voxel, int a_th)

Additional Inherited Members
Protected Attributes inherited from vPenalty
string	m_penaltyID

oImageDimensionsAndQuantification *	mp_ImageDimensionsAndQuantification

oImageSpace *	mp_ImageSpace

int	m_verbose

int	m_penaltyDerivativesOrder

FLTNB	m_penaltyStrength

vDataFile *	mp_DataFile

Detailed Description

This class implements the general Markov Random Field kind of penalties.

This class inherits from vPenalty and implements the general MRF penalties.

Definition at line 45 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

Constructor & Destructor Documentation

◆ iPenaltyMarkovRandomField() [1/2]

iPenaltyMarkovRandomField::iPenaltyMarkovRandomField ( )

The constructor of iPenaltyMarkovRandomField.

This is the default and unique constructor. It does not take any parameter and its role is only to affect default values to each member of the class.

Definition at line 15 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

◆ ~iPenaltyMarkovRandomField() [1/2]

iPenaltyMarkovRandomField::~iPenaltyMarkovRandomField ( )

The destructor of iPenaltyMarkovRandomField.

This is the default and unique destructor. It does not take any parameter and its role is only to free or delete all structures that were built by this class.

Definition at line 51 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ iPenaltyMarkovRandomField() [2/2]

iPenaltyMarkovRandomField::iPenaltyMarkovRandomField ( )

◆ ~iPenaltyMarkovRandomField() [2/2]

iPenaltyMarkovRandomField::~iPenaltyMarkovRandomField ( )

Member Function Documentation

◆ BuildNeighborhoodKernel() [1/2]

int iPenaltyMarkovRandomField::BuildNeighborhoodKernel ( )

private

◆ BuildNeighborhoodKernel() [2/2]

int iPenaltyMarkovRandomField::BuildNeighborhoodKernel ( )

private

A function used to build the neighborhood kernel.

This function build the table m2p_neighborhoodKernel, that prepare neighborhood indices operations. It is called only one time at initialization. The kernel will be used when computing the specific neighborhood of any voxel later on.

Returns: An integer reflecting the reading success; 0 if success, another value otherwise.

Definition at line 637 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ BuildProximityFactors() [1/2]

int iPenaltyMarkovRandomField::BuildProximityFactors ( )

private

◆ BuildProximityFactors() [2/2]

int iPenaltyMarkovRandomField::BuildProximityFactors ( )

private

A function used to build the kernel of the proximity factors.

This function build the table FLTNB* mp_proximityKernel

Returns: An integer reflecting the reading success; 0 if success, another value otherwise.

Definition at line 782 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ BuildSpecificNeighborhood() [1/2]

int iPenaltyMarkovRandomField::BuildSpecificNeighborhood	(	INTNB	a_voxel,
		int	a_th
	)

◆ BuildSpecificNeighborhood() [2/2]

int iPenaltyMarkovRandomField::BuildSpecificNeighborhood	(	INTNB	a_voxel,
		int	a_th
	)

Definition at line 873 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ CheckSpecificParameters() [1/2]

int iPenaltyMarkovRandomField::CheckSpecificParameters ( )

privatevirtual

A private function used to check the parameters settings specific to the child penalty.

This function is used to check that all parameters specific to the penalty are correctly set within allowed values. It is called by the CheckParameters() function. It is pure virtual so is implemented by children.

Returns: An integer reflecting the check status; 0 if no problem, another value otherwise.

Implements vPenalty.

◆ CheckSpecificParameters() [2/2]

int iPenaltyMarkovRandomField::CheckSpecificParameters ( )

privatevirtual

A private function used to check the parameters settings specific to the child penalty.

This function is used to check that all parameters specific to the penalty are correctly set within allowed values. It is called by the CheckParameters() function of the mother class. It is the implementation of the pure virtual function inherited from the abstract mother class vPenalty.

Returns: An integer reflecting the check status; 0 if no problem, another value otherwise.

Implements vPenalty.

Definition at line 408 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ ComputeFirstDerivative() [1/2]

FLTNB iPenaltyMarkovRandomField::ComputeFirstDerivative	(	FLTNB *	ap_image,
		INTNB	a_voxel,
		int	a_th
	)

virtual

Implements vPenalty.

Definition at line 1067 of file src/optimizer/iPenaltyMarkovRandomField.cc.

◆ ComputeFirstDerivative() [2/2]

FLTNB iPenaltyMarkovRandomField::ComputeFirstDerivative	(	int	a_tbf,
		int	a_rbf,
		int	a_cbf,
		INTNB	a_voxel,
		int	a_th
	)

virtual

Implements vPenalty.

Definition at line 1071 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

◆ ComputePenaltyValue() [1/2]

FLTNB iPenaltyMarkovRandomField::ComputePenaltyValue	(	FLTNB *	ap_image,
		INTNB	a_voxel,
		int	a_th
	)

virtual

Implements vPenalty.

Definition at line 983 of file src/optimizer/iPenaltyMarkovRandomField.cc.

◆ ComputePenaltyValue() [2/2]

FLTNB iPenaltyMarkovRandomField::ComputePenaltyValue	(	int	a_tbf,
		int	a_rbf,
		int	a_cbf,
		INTNB	a_voxel,
		int	a_th
	)

virtual

Implements vPenalty.

Definition at line 985 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

◆ ComputeSecondDerivative() [1/2]

FLTNB iPenaltyMarkovRandomField::ComputeSecondDerivative	(	FLTNB *	ap_image,
		INTNB	a_voxel,
		int	a_th
	)

virtual

Implements vPenalty.

Definition at line 1162 of file src/optimizer/iPenaltyMarkovRandomField.cc.

◆ ComputeSecondDerivative() [2/2]

FLTNB iPenaltyMarkovRandomField::ComputeSecondDerivative	(	int	a_tbf,
		int	a_rbf,
		int	a_cbf,
		INTNB	a_voxel,
		int	a_th
	)

virtual

Implements vPenalty.

Definition at line 1166 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

◆ ComputeSimilarityFactors() [1/2]

int iPenaltyMarkovRandomField::ComputeSimilarityFactors	(	int	a_tbf,
		int	a_rbf,
		int	a_cbf,
		INTNB	a_voxel,
		int	a_th
	)

private

◆ ComputeSimilarityFactors() [2/2]

int iPenaltyMarkovRandomField::ComputeSimilarityFactors	(	int	a_tbf,
		int	a_rbf,
		int	a_cbf,
		INTNB	a_voxel,
		int	a_th
	)

private

Definition at line 917 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ GetNeighborhoodIndices() [1/2]

INTNB** iPenaltyMarkovRandomField::GetNeighborhoodIndices ( )

inline

Definition at line 180 of file include/optimizer/iPenaltyMarkovRandomField.hh.

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◆ GetNeighborhoodIndices() [2/2]

public inline INTNB ** iPenaltyMarkovRandomField::GetNeighborhoodIndices ( )

inline

Returns: m2p_neighborhoodIndices

Definition at line 186 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

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◆ GetNeighborhoodMaxNbVoxels() [1/2]

INTNB iPenaltyMarkovRandomField::GetNeighborhoodMaxNbVoxels ( )

inline

Definition at line 175 of file include/optimizer/iPenaltyMarkovRandomField.hh.

◆ GetNeighborhoodMaxNbVoxels() [2/2]

public inline INTNB iPenaltyMarkovRandomField::GetNeighborhoodMaxNbVoxels ( )

inline

Returns: m_neighborhoodMaxNbVoxels

Definition at line 181 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

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◆ GetPotentialType() [1/2]

int iPenaltyMarkovRandomField::GetPotentialType ( )

inline

Definition at line 159 of file include/optimizer/iPenaltyMarkovRandomField.hh.

◆ GetPotentialType() [2/2]

public inline int iPenaltyMarkovRandomField::GetPotentialType ( )

inline

Returns: m_potentialType

Definition at line 165 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ GetProximityKernel() [1/2]

FLTNB* iPenaltyMarkovRandomField::GetProximityKernel ( )

inline

Definition at line 164 of file include/optimizer/iPenaltyMarkovRandomField.hh.

◆ GetProximityKernel() [2/2]

public inline FLTNB * iPenaltyMarkovRandomField::GetProximityKernel ( )

inline

Returns: mp_proximityKernel

Definition at line 170 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

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◆ GetSimilarityFactors() [1/2]

FLTNB* iPenaltyMarkovRandomField::GetSimilarityFactors ( int a_th )

inline

Definition at line 170 of file include/optimizer/iPenaltyMarkovRandomField.hh.

◆ GetSimilarityFactors() [2/2]

FLTNB* iPenaltyMarkovRandomField::GetSimilarityFactors ( int a_th )

inline

Definition at line 176 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

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◆ InitializeSpecific() [1/2]

int iPenaltyMarkovRandomField::InitializeSpecific ( )

privatevirtual

A private function used to initialize everything specific to the child penalty.

This function is used to initialize everything specific to the penalty that should be initialized. It is called by the Initialize() function. It is pure virtual so is implemented by children.

Returns: An integer reflecting the initialization status; 0 if no problem, another value otherwise.

Implements vPenalty.

◆ InitializeSpecific() [2/2]

int iPenaltyMarkovRandomField::InitializeSpecific ( )

privatevirtual

This function is used to initialize specific stuff to the child penalty.

It is called by the public Initialize() function from the mother.

Returns: An integer reflecting the initialization status; 0 if no problem, another value otherwise.

Implements vPenalty.

Definition at line 510 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ LocalPreProcessingStep() [1/2]

int iPenaltyMarkovRandomField::LocalPreProcessingStep	(	int	a_tbf,
		int	a_rbf,
		int	a_cbf,
		INTNB	a_voxel,
		int	a_th
	)

virtual

Reimplemented from vPenalty.

Definition at line 962 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ LocalPreProcessingStep() [2/2]

int iPenaltyMarkovRandomField::LocalPreProcessingStep	(	int	a_tbf,
		int	a_rbf,
		int	a_cbf,
		INTNB	a_voxel,
		int	a_th
	)

virtual

Reimplemented from vPenalty.

◆ ReadConfigurationFile() [1/2]

int iPenaltyMarkovRandomField::ReadConfigurationFile ( const string & a_configurationFile )

virtual

Implements vPenalty.

◆ ReadConfigurationFile() [2/2]

int iPenaltyMarkovRandomField::ReadConfigurationFile ( const string & a_configurationFile )

virtual

Implements vPenalty.

Definition at line 171 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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◆ ReadOptionsList() [1/2]

int iPenaltyMarkovRandomField::ReadOptionsList ( const string & a_optionsList )

virtual

Implements vPenalty.

Definition at line 396 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

◆ ReadOptionsList() [2/2]

int iPenaltyMarkovRandomField::ReadOptionsList ( const string & a_optionsList )

virtual

Implements vPenalty.

◆ ShowHelpSpecific() [1/2]

void iPenaltyMarkovRandomField::ShowHelpSpecific ( )

privatevirtual

A function used to show help about the child module.

This function must describe what the penalty does and how to use it. It describes in details the different parameters of the penalty, and how to set them through the use of a configuration file or a list of options. It is pure virtual so is implemented by children. It is private because called by the public ShowHelp() function.

Implements vPenalty.

◆ ShowHelpSpecific() [2/2]

void iPenaltyMarkovRandomField::ShowHelpSpecific ( )

privatevirtual

A function used to show help about the child penalty.

This function must describe what the module does and how to use it. It describes in details the different parameters of the penalty, and how to set them through the use of a configuration file or a list of options. It is the implementation of the pure virtual function inherited from the abstract class vPenalty. It is called by the public ShowHelp() function.

Implements vPenalty.

Definition at line 97 of file code/src/optimizer/iPenaltyMarkovRandomField.cc.

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Member Data Documentation

◆ m2p_helper_bowsher

INTNB** iPenaltyMarkovRandomField::m2p_helper_bowsher

private

Helper variable for Bowsher computations, first index on threads, second on neighborhood voxels, same ordering as neighboring kernel

Definition at line 269 of file include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m2p_neighborhoodIndices

INTNB ** iPenaltyMarkovRandomField::m2p_neighborhoodIndices

private

Neighborhood indices of a specific voxel. First index is on the threads, second one contains the list of the voxels in the neighborhood (as many as m_neighborhoodMaxNbVoxels). It follows strictly the same order than m2p_neighborhoodKernel, with the convention -1: out of image boundaries

Definition at line 274 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m2p_neighborhoodKernel

INTNB ** iPenaltyMarkovRandomField::m2p_neighborhoodKernel

private

Neighborhood of a virtual voxel of coordinates 0, 0, 0 without boundary. First index on neighboring voxels, second one on indexes

Definition at line 272 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m2p_similarityFactors

FLTNB ** iPenaltyMarkovRandomField::m2p_similarityFactors

private

Similarity factors of the neighborhood. First index on threads, second on neighboring voxels, as for m2p_neighborhoodIndices

Definition at line 264 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_neighborhoodBoxExcludeCorners

int iPenaltyMarkovRandomField::m_neighborhoodBoxExcludeCorners

private

In case of a box neighborhood, remove the corners as in some papers, or not (keep them by default)

Definition at line 270 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_neighborhoodBoxOrder

int iPenaltyMarkovRandomField::m_neighborhoodBoxOrder

private

In case of a box neighborhood, order of the box

Definition at line 269 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_neighborhoodMaxNbVoxels

INTNB iPenaltyMarkovRandomField::m_neighborhoodMaxNbVoxels

private

Maximum number of voxels in the neighborhood

Definition at line 271 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_neighborhoodShape

int iPenaltyMarkovRandomField::m_neighborhoodShape

private

Type of neighborhood (sphere, box)

Definition at line 267 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_neighborhoodSphereRadius

FLTNB iPenaltyMarkovRandomField::m_neighborhoodSphereRadius

private

In case of a spherical neighborhood, radius of the sphere

Definition at line 268 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_potentialGemanMcClureDelta

FLTNB iPenaltyMarkovRandomField::m_potentialGemanMcClureDelta

private

Parameter of the Geman and McClure's potential function

Definition at line 253 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_potentialGreenLogCoshDelta

FLTNB iPenaltyMarkovRandomField::m_potentialGreenLogCoshDelta

private

Parameter of the Green's log-cosh potential function

Definition at line 254 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_potentialHebertLeahyMu

FLTNB iPenaltyMarkovRandomField::m_potentialHebertLeahyMu

private

Parameter of the Hebert and Leahy's potential function

Definition at line 255 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_potentialHuberDelta

FLTNB iPenaltyMarkovRandomField::m_potentialHuberDelta

private

Parameter of the piecewise Huber potential function

Definition at line 256 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_potentialRelativeDifferenceGamma

FLTNB iPenaltyMarkovRandomField::m_potentialRelativeDifferenceGamma

private

Parameter of the relative difference potential function

Definition at line 252 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_potentialType

int iPenaltyMarkovRandomField::m_potentialType

private

Type of the potential function used (e.g. quadratic)

Definition at line 251 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_proximityCharacteristicDistance

FLTNB iPenaltyMarkovRandomField::m_proximityCharacteristicDistance

private

When the proximity factors are the exponential distance squared, this is the characteristic distance

Definition at line 259 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_proximityGaussianFWHM

FLTNB iPenaltyMarkovRandomField::m_proximityGaussianFWHM

private

When the proximity factors follow a Gaussian distribution, this is the FWHM in mm

Definition at line 253 of file include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_proximityType

int iPenaltyMarkovRandomField::m_proximityType

private

Type of weighting based on proximity (e.g. the inverse of the euclidian distance between voxels)

Definition at line 258 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_similarityBowsherNbVoxels

INTNB iPenaltyMarkovRandomField::m_similarityBowsherNbVoxels

private

The number of voxels kept from the Bowsher's threashold

Definition at line 265 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_similarityBowsherThreshold

FLTNB iPenaltyMarkovRandomField::m_similarityBowsherThreshold

private

Percentage of the neighborhood voxels for defining the most similar Bowsher neighbor voxels

Definition at line 263 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ m_similarityType

int iPenaltyMarkovRandomField::m_similarityType

private

Type of weighting based on similarity (e.g. joint entropy)

Definition at line 262 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ mp_neighborhoodNbVoxels

INTNB * iPenaltyMarkovRandomField::mp_neighborhoodNbVoxels

private

Number of voxels in a specific neighborhood. The index is on threads

Definition at line 273 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

◆ mp_proximityKernel

FLTNB * iPenaltyMarkovRandomField::mp_proximityKernel

private

Precomputation of the proximity factors. Index is on neighboring voxels, as for m2p_neighborhoodKernel

Definition at line 260 of file code/include/optimizer/iPenaltyMarkovRandomField.hh.

The documentation for this class was generated from the following files:

Private Attributes
int	m_potentialType

FLTNB	m_potentialRelativeDifferenceGamma

FLTNB	m_potentialGemanMcClureDelta

FLTNB	m_potentialGreenLogCoshDelta

FLTNB	m_potentialHebertLeahyMu

FLTNB	m_potentialHuberDelta

int	m_proximityType

FLTNB	m_proximityCharacteristicDistance

FLTNB *	mp_proximityKernel

int	m_similarityType

FLTNB	m_similarityBowsherThreshold

FLTNB **	m2p_similarityFactors

INTNB	m_similarityBowsherNbVoxels

int	m_neighborhoodShape

FLTNB	m_neighborhoodSphereRadius

int	m_neighborhoodBoxOrder

int	m_neighborhoodBoxExcludeCorners

INTNB	m_neighborhoodMaxNbVoxels

INTNB **	m2p_neighborhoodKernel

INTNB *	mp_neighborhoodNbVoxels

INTNB **	m2p_neighborhoodIndices

FLTNB	m_proximityGaussianFWHM

INTNB **	m2p_helper_bowsher

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ iPenaltyMarkovRandomField() [1/2]

◆ ~iPenaltyMarkovRandomField() [1/2]

◆ iPenaltyMarkovRandomField() [2/2]

◆ ~iPenaltyMarkovRandomField() [2/2]

Member Function Documentation

◆ BuildNeighborhoodKernel() [1/2]

◆ BuildNeighborhoodKernel() [2/2]

◆ BuildProximityFactors() [1/2]

◆ BuildProximityFactors() [2/2]

◆ BuildSpecificNeighborhood() [1/2]

◆ BuildSpecificNeighborhood() [2/2]

◆ CheckSpecificParameters() [1/2]

◆ CheckSpecificParameters() [2/2]

◆ ComputeFirstDerivative() [1/2]

◆ ComputeFirstDerivative() [2/2]

◆ ComputePenaltyValue() [1/2]

◆ ComputePenaltyValue() [2/2]

◆ ComputeSecondDerivative() [1/2]

◆ ComputeSecondDerivative() [2/2]

◆ ComputeSimilarityFactors() [1/2]

◆ ComputeSimilarityFactors() [2/2]

◆ GetNeighborhoodIndices() [1/2]

◆ GetNeighborhoodIndices() [2/2]

◆ GetNeighborhoodMaxNbVoxels() [1/2]

◆ GetNeighborhoodMaxNbVoxels() [2/2]

◆ GetPotentialType() [1/2]

◆ GetPotentialType() [2/2]

◆ GetProximityKernel() [1/2]

◆ GetProximityKernel() [2/2]

◆ GetSimilarityFactors() [1/2]

◆ GetSimilarityFactors() [2/2]

◆ InitializeSpecific() [1/2]

◆ InitializeSpecific() [2/2]

◆ LocalPreProcessingStep() [1/2]

◆ LocalPreProcessingStep() [2/2]

◆ ReadConfigurationFile() [1/2]

◆ ReadConfigurationFile() [2/2]

◆ ReadOptionsList() [1/2]

◆ ReadOptionsList() [2/2]

◆ ShowHelpSpecific() [1/2]

◆ ShowHelpSpecific() [2/2]

Member Data Documentation

◆ m2p_helper_bowsher

◆ m2p_neighborhoodIndices

◆ m2p_neighborhoodKernel

◆ m2p_similarityFactors

◆ m_neighborhoodBoxExcludeCorners

◆ m_neighborhoodBoxOrder

◆ m_neighborhoodMaxNbVoxels

◆ m_neighborhoodShape

◆ m_neighborhoodSphereRadius

◆ m_potentialGemanMcClureDelta

◆ m_potentialGreenLogCoshDelta

◆ m_potentialHebertLeahyMu

◆ m_potentialHuberDelta

◆ m_potentialRelativeDifferenceGamma

◆ m_potentialType

◆ m_proximityCharacteristicDistance

◆ m_proximityGaussianFWHM

◆ m_proximityType

◆ m_similarityBowsherNbVoxels

◆ m_similarityBowsherThreshold

◆ m_similarityType

◆ mp_neighborhoodNbVoxels

◆ mp_proximityKernel