include/algorithm/vAlgorithm.hh

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#ifndef VALGORITHM_HH
#define VALGORITHM_HH 1

#include "gVariables.hh"
#include "oImageDimensionsAndQuantification.hh"
#include "oProjectorManager.hh"
#include "oImageConvolverManager.hh"
#include "oImageProcessingManager.hh"
#include "oOptimizerManager.hh"
#include "oDeformationManager.hh"
#include "oDynamicModelManager.hh"
#include "oImageSpace.hh"
#include "vDataFile.hh"
#include "sChronoManager.hh"


class vAlgorithm
{
  // Constructor & Destructor
  public:
    vAlgorithm();
    virtual ~vAlgorithm();



  // -------------------------------------------------------------------
  // Public member functions
  public:
    int Run();
    int RunCPU();
    #ifdef CASTOR_GPU

    int RunGPU();
    #endif

    inline void SetSaveSensitivityHistoFlag(bool a_saveSensitivityHistoFlag)
           {m_saveSensitivityHistoFlag = a_saveSensitivityHistoFlag;}
    inline void SetSaveSubsetImageFlag(bool a_saveImageAfterSubsets)
           {m_saveImageAfterSubsets = a_saveImageAfterSubsets;}
    inline void SetSaveDynamicBasisCoefficientImages(bool a_saveDynamicBasisCoefficients)
           {m_saveDynamicBasisCoefficients = a_saveDynamicBasisCoefficients;}
    inline void SetOptimizerManager(oOptimizerManager* ap_OptimizerManager)
           {mp_OptimizerManager = ap_OptimizerManager;}
    inline void SetImageDimensionsAndQuantification(oImageDimensionsAndQuantification* ap_ImageDimensionsAndQuantification)
           {mp_ID = ap_ImageDimensionsAndQuantification;}
    inline void SetImageSpace(oImageSpace* ap_ImageSpace)
           {mp_ImageSpace = ap_ImageSpace;}
    inline void SetProjectorManager(oProjectorManager* ap_ProjectorManager)
           {mp_ProjectorManager = ap_ProjectorManager;}
    inline void SetImageConvolverManager(oImageConvolverManager* ap_ImageConvolverManager)
           {mp_ImageConvolverManager = ap_ImageConvolverManager;}
    inline void SetImageProcessingManager(oImageProcessingManager* ap_ImageProcessingManager)
           {mp_ImageProcessingManager = ap_ImageProcessingManager;}
    inline void SetDynamicModelManager(oDynamicModelManager* ap_DynamicModelManager)
           {mp_DynamicModelManager = ap_DynamicModelManager;}
    inline void SetDeformationManager(oDeformationManager* ap_DeformationManager)
           {mp_DeformationManager = ap_DeformationManager;}
    inline void SetDataFile(vDataFile** a2p_DataFile)
           {m2p_DataFile = a2p_DataFile;}
    inline void SetGPUflag(bool a_flagGPU)
           {m_flagGPU = a_flagGPU;}
    inline void SetVerbose(int a_verboseLevel)
           {m_verbose = a_verboseLevel;}
    inline void SetNbBeds(int a_nbBeds)
           {m_nbBeds = a_nbBeds;}
    inline void SetPathInitImage(string a_pathToInitialImage)
           {m_pathToInitialImg = a_pathToInitialImage;}
    inline void SetPathToAttenuationImage(string a_pathToAttenuationImage)
           {m_pathToAtnImg = a_pathToAttenuationImage;}
    inline void SetPathToSensitivityImage(string a_pathToSensitivityImage)
           {m_pathToSensitivityImg = a_pathToSensitivityImage;}
    inline void SetPathToMultiModalImage(vector<string> a_pathToMultiModalImage)
           {m_pathToMultiModalImg = a_pathToMultiModalImage;}
    int SetNbIterationsAndSubsets(const string& a_nbIterationsSubsets);
    inline void SetNbSkippedIterations(const string& a_skippedIterations)
                {m_nbSkippedIterations = atoi(a_skippedIterations.c_str());}
    int SetOutputIterations(const string& a_outputIterations);
    virtual int InitSpecificOptions(string a_specificOptions);
    virtual void ShowHelpSpecific(){}


  // -------------------------------------------------------------------
  // Protected member functions
  protected:
    virtual int StepBeforeIterationLoop();
    virtual int StepAfterIterationLoop();
    virtual int StepBeforeSubsetLoop(int a_iteration);
    virtual int StepAfterSubsetLoop(int a_iteration);
    virtual int StepPreProcessInsideSubsetLoop(int a_iteration, int a_subset);
    virtual int StepPostProcessInsideSubsetLoop(int a_iteration, int a_subset);
    virtual int StepInnerLoopInsideSubsetLoop(int a_iteration, int a_subset, int a_bed) = 0;
    virtual int StepImageOutput(int a_iteration, int a_subset = -1) = 0;


  // -------------------------------------------------------------------
  // Data members
  protected:
    int m_nbIterations;                                 
    int m_nbSkippedIterations;                           
    int* mp_nbSubsets;                                  
    bool* mp_outputIterations;                          
    int m_verbose;                                      
    bool m_flagGPU;                                     
    oImageDimensionsAndQuantification* mp_ID;           
    vDataFile** m2p_DataFile;                           
    oProjectorManager* mp_ProjectorManager;             
    oOptimizerManager* mp_OptimizerManager;             
    oDeformationManager* mp_DeformationManager;         
    oDynamicModelManager* mp_DynamicModelManager;       
    oImageSpace* mp_ImageSpace;                         
    oImageConvolverManager* mp_ImageConvolverManager;   
    oImageProcessingManager* mp_ImageProcessingManager; 
    int m_nbBeds;                                       
    string m_pathToInitialImg;                          
    string m_pathToAtnImg;                              
    string m_pathToSensitivityImg;                      
    vector<string> m_pathToMultiModalImg;               
    bool m_saveSensitivityHistoFlag;                    
    bool m_saveImageAfterSubsets;                       
    bool m_saveDynamicBasisCoefficients;                
};

#endif