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CASToR
3.2
Tomographic Reconstruction (PET/SPECT/CT)
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| C_WDIR | |
| C_wdirent | |
| CDIR | |
| Cdirent | |
| Ci1TCModel | This class implements a 1 compartiment model, to model kinetics of radiotracers such as radiowater |
| CiDataFileCT | Inherit from vDataFile. Class that manages the reading of a CT input file (header + data) |
| CiDataFilePET | Inherit from vDataFile. Class that manages the reading of a PET input file (header + data) |
| CiDataFileSPECT | Inherit from vDataFile. Class that manages the reading of a SPECT input file (header + data) |
| CiDeformationRigid | This class performs rigid transformation based on a trilinear interpolation It requires ASCII parameter files containing x,y,z transformation vectors |
| CiDeformationTemplate | This class is a child of the vDeformation class implementing a template squeleton |
| CiDynamicModelTemplate | This class is a child of the vDynamicModel class implementing a template squeleton |
| CiEventCT | Inherit from vEvent. Main CT class for the Event objects |
| CiEventHistoCT | Inherit from iEventCT. Class for CT histogram mode events |
| CiEventHistoPET | Inherit from iEventPET. Class for PET histogram mode events |
| CiEventHistoSPECT | Inherit from iEventSPECT. Class for SPECT histogram mode events |
| CiEventListCT | Inherit from iEventCT. Class for CT list-mode events |
| CiEventListPET | Inherit from iEventPET. Class for PET list-mode events |
| CiEventListSPECT | Inherit from iEventSPECT. Class for SPECT list-mode events |
| CiEventNorm | Inherit from vEvent. Used for normalization events for sensitivity computation |
| CiEventPET | Inherit from vEvent. Main PET class for the Event objects |
| CiEventSPECT | Inherit from vEvent. Main SPECT class for the Event objects |
| CiImageConvolverStationaryGaussian | This class is an image convolver module implementing stationary gaussian filtering |
| CiImageConvolverStationaryIsotropicGaussian | This class is an image convolver module implementing stationary and isotropic gaussian filtering |
| CiImageConvolverTemplate | This class is a template of an image convolver module to serve as an example |
| CiImageProcessingTemplate | This class is a template of an image processing module to serve as an example |
| CiIterativeAlgorithm | |
| CiLinearModel | This class implements a general linear dynamic model applied between the images of a dynamic acquisition The model is applied on a voxel-by-voxel basis between the images of the frames and/or respiratory/cardiac gates |
| CiLinearModelTemplate | This class is a child of the vDynamicModel class implementing a template squeleton |
| CiLinearPatlakModel | This class implements the Patlak model, to model kinetics of irreversible radiotracers |
| CiLinearSpectralModel | This class is a child of the iLinearModel class implementing the Nested Spectral reconsutction |
| CIntf_fields | Interfile fields. This structure contains all the Interfile keys currently managed by CASToR Declared in oInterfileIO.hh |
| CIntf_key | Interfile key elements. This structure is used to recover and process the elements of an Interfile key ( key := value #anycomment) Declared in oInterfileIO.hh |
| CiOptimizerADMMLim | This class implements the ADMM with non-negativity on projection space |
| CiOptimizerAPPGML | This class implements the A-Preconditioned Gradient MAP algorithm |
| CiOptimizerBSREM | This class implements the Block Sequential Regularized Expectation Maximization (BSREM) algorithm |
| CiOptimizerLandweber | This class implements the Landweber algorithm |
| CiOptimizerMLEM | This class implements the Maximum Likelihood Expectation Maximization algorithm |
| CiOptimizerMLMuMap | This class implements an adaptation of MLEM to reconstruct an attenuation image from ACF in a PET histogram datafile |
| CiOptimizerMLTR | This class implements a version of the Maximum Likelihood Transmission algorithm |
| CiOptimizerModifiedEMForMRFPenalizedML | This class implements the One Step Late algorithm |
| CiOptimizerNEGML | This class implements the NEGML algorithm |
| CiOptimizerOneStepLate | This class implements the One Step Late algorithm |
| CiOptimizerOriginalAML | This class implements the original AML algorithm (AB-EMML with B to infinity) |
| CiOptimizerPenalizedPreconditionedGradientML | This class implements the Preconditioned Gradient MAP algorithm |
| CiOptimizerSens | This class implements the Maximum Likelihood Expectation Maximization algorithm |
| CiOptimizerTemplate | This class is a child of the vOptimizer class implementing a template squeleton |
| CiPenaltyMarkovRandomField | This class implements the general Markov Random Field kind of penalties |
| CiPenaltyMedianRootPrior | This class implements the "median root prior" |
| CiPenaltyQuadratic | This class is a Quadratic for penalties |
| CiPenaltyTemplate | This class is a template for penalties |
| CiProjectorClassicSiddon | This class is a child of the vProjector class implementing the classic Siddon ray tracer |
| CiProjectorDistanceDriven | This class is a child of the vProjector class implementing the distance driven ray tracer |
| CiProjectorIncrementalSiddon | This class is a child of the vProjector class implementing the incremental Siddon ray tracer |
| CiProjectorIncrementalSiddonMulti | This class is a child of the vProjector class implementing the multi incremental Siddon ray tracer |
| CiProjectorJoseph | This class is a child of the vProjector class implementing the Joseph ray tracer |
| CiProjectorTemplate | This class is a child of the vProjector class implementing a template squeleton |
| CiRCPGSAlgorithm | RCP-GS : Random Clustering Prior - Gibbs Sampler |
| CiScannerCT | This class is used to represent any CT camera with either a CBCT ascii description or a LUT file for any style of detector |
| CiScannerPET | This class is used to represent any cylindrical PET scanner |
| CiScannerSPECTConv | This class is used to represent any SPECT camera with parallel/convergent collimator |
| CoAnalyticProjection | This class manages the analytic projection of an image and the computation of the associated datafile. |
| CoArterialInputCurve | This class is designed to manage the Arterial Input Curve provided by the user |
| CoComputeProjection | Class that manages the data update step of analytic projection |
| CoDeformationManager | This class is designed to manage the image-based deformation part of the reconstruction |
| CoDynamicDataManager | This class gathers the information about the dynamic splitting of the data |
| CoDynamicModelManager | This class is designed to manage the use of dynamic model in the reconstruction |
| CoImageConvolverManager | This class is designed to manage the different image convolvers and to apply them |
| CoImageDimensionsAndQuantification | This class is designed to manage all dimensions and quantification related stuff |
| CoImageProcessingManager | This class is designed to manage the different image processing modules and to apply them |
| CoImageSpace | This class holds all the matrices in the image domain that can be used in the algorithm: image, forward-image, correction, additional image, sensitivity image |
| CoIterativeAlgorithm | This is the main class for iterative optimization reconstruction algorithms. |
| CoMatrix | Structure designed for basic matrices operations |
| CoMemoryMapped | Portable read-only memory mapping (Windows and Linux) |
| CoOptimizerManager | This class is designed to manage the optimization part of an iterative reconstruction |
| CoProjectionLine | This class is designed to manage and store system matrix elements associated to a vEvent |
| CoProjectorManager | This class is designed to manage the projection part of the reconstruction |
| CoSensitivityGenerator | This class is designed to manage the computation of the sensitivity image |
| CoSystemMatrix | This class is designed to manage pre-computed system matrices |
| CsAddonManager | This class is designed to manage the automatic declaration of 'addon' classes |
| CsChronoManager | This class is designed to manage some profiling of the code |
| CsOutputManager | Singleton class that manages output writing on disk (images, sinograms, etc). It also manages logging and printing on screen |
| CsRandomNumberGenerator | Singleton class that generate a thread-safe random generator number for openMP As singleton, it can be called from any class requiring RNGs |
| CsScannerManager | Singleton class that Instantiate and initialize the scanner object |
| CTroot_pet | This structure contains variables corresponding to a ROOT tree for CylindricalPET and ECAT system. Declared in castor-GATERootToCastor.cc |
| CTroot_spect | This structure contains variables corresponding to a ROOT tree for SPECTHead system. Declared in castor-GATERootToCastor.cc |
| CvAlgorithm | This is the base class for reconstructions, containing a framework with iteration and data subset loops. It contains all the managers and the images |
| CvDataFile | This class is designed to be a mother virtual class for DataFile |
| CvDeformation | This is the mother class of image-based transformation class |
| CvDynamicModel | This is the mother class of dynamic model classes |
| CvEvent | Mother class for the Event objects |
| CvImageConvolver | This abstract class is the generic image convolver class used by the oImageConvolverManager |
| CvImageProcessingModule | This abstract class is the generic image processing module class used by the oImageProcessingManager |
| CvOptimizer | This class is designed to generically described any iterative optimizer |
| CvPenalty | This class is designed to generically described any penalty applied to MAP algorithms |
| CvProjector | This class is designed to generically described any on-the-fly projector |
| CvScanner | Generic class for scanner objects |
1.8.13
