File List

Here is a list of all files with brief descriptions:

castor-datafileConversionEx.cc	This program is an example code providing guidance regarding how to generate a PET CASToR datafile from any system datafile. It does not perform any conversion by itself and must be adjusted to the conversion of any system dataset. It uses a GATE model of a General Electric PET system as example. It implements the required calls to CASToR Datafile and Event objects and functions in order to write a dataset in the CASToR format, with or without optionnal correction factors (scatter, random, normalization coefficients, etc)
castor-GATEMacToGeom.cc	This code allows the conversion of a GATE macro file defining a cylindricalPET or ecat geometry into a CASToR ASCII .geom file. This script currently only supports 'cylindricalPET' and 'ecat' systems. Two arguments are required :
castor-GATERootToCastor.cc	This program convert a GATE datafile in root format to a list-mode datafile in CASToR format
castor-mergeBedPositions.cc	This program is used to merge a group of images corresponding to multiple bed positions reconstructed separately
castor-PetScannerLutEx.cc	This program generates a CASToR Look-Up-Table (LUT) containing geometry information related to each crystal of a PET system. The LUT contains x,y,z cartesian position of the center of each crystals, as well as their transaxial angular orientations. The LUT files is composed of two files : (1) A binary file containing for each crystal: Cartesian positions (X,Y,Z) of the center of the crystals, and Vector orientation (X,Y,Z), corresponding to the angular orientation of each crystal (see documentation) (2) A header file containing several informations about the system. CASToR algorithms will keep a similar crystal indexation as the LUT was written, and load it in RAM This script uses a GATE model of a General Electric PET system as example
castor-proj.cc	This is the main program of the analytic projection tool for CASToR It reads/parses/checks the command-line options provided by the user, initialize each manager classes with the correct set of options, and launch the projection algorithm (managed by oAnalyticProjection)
castor-recon.cc	CASToR: Customizable and Advanced Software for Tomographic Reconstruction This is the main reconstruction program of the CASToR software. It reads/parses/checks the command-line options, initialize each manager classes with the correct set of options, and launch the reconstruction algorithm (currently managed by oIterativeAlgorithm). For list-mode datafiles, if a sensitivity image is not provided using "-sens", it is generated before reconstruction (managed by oSensitivityGenerator)
doxygen_mainpage.hh
gDataConversionUtilities.cc	Implementation of class gDataConversionUtilities functions
gDataConversionUtilities.hh	This file gathers various function dedicated to data conversion in order to convert various type of GATE files (macro file, root datafile) to the CASToR file formats
gOptions.cc	Implementation of class gOptions functions
gOptions.hh	This file is used for all kind of different functions designed for options parsing and ASCII file reading. All functions included here are not class members
gVariables.hh	This header file is mainly used to declare some macro definitions and all includes needed from the standard c library
iDataFilePET.cc	Implementation of class iDataFilePET
iDataFilePET.hh	Declaration of class iDataFilePET
iDataFileSPECT.cc	Implementation of class iDataFileSPECT
iDataFileSPECT.hh	Declaration of class iDataFileSPECT
iDataFileTransmission.cc	Implementation of class iDataFileTransmission
iDataFileTransmission.hh	Declaration of class iDataFileTransmission
iDeformationTemplate.cc	Implementation of class iDeformationTemplate
iDeformationTemplate.hh	Declaration of class iDeformationTemplate
iDynamicModelTemplate.cc	Implementation of class iDynamicModelTemplate
iDynamicModelTemplate.hh	Declaration of class iDynamicModelTemplate
iEventHistoPET.cc	Implementation of class iEventHistoPET
iEventHistoPET.hh	Declaration of class iEventHistoPET
iEventHistoSPECT.cc	Implementation of class iEventHistoSPECT
iEventHistoSPECT.hh	Declaration of class iEventHistoSPECT
iEventListPET.cc	Implementation of class iEventListPET
iEventListPET.hh	Declaration of class iEventListPET
iEventListSPECT.cc	Implementation of class iEventListSPECT
iEventListSPECT.hh	Declaration of class iEventListSPECT
iEventNorm.cc	Implementation of class iEventNorm
iEventNorm.hh	Declaration of class iEventNorm
iEventPET.cc	Implementation of class iEventPET
iEventPET.hh	Declaration of class iEventPET
iEventSPECT.cc	Implementation of class iEventSPECT
iEventSPECT.hh	Declaration of class iEventSPECT
iEventTransmission.cc	Implementation of class iEventTransmission
iEventTransmission.hh	Declaration of class iEventTransmission
iImageConvolverStationaryGaussian.cc	Implementation of class iImageConvolverStationaryGaussian
iImageConvolverStationaryGaussian.hh	Declaration of class iImageConvolverStationaryGaussian
iImageConvolverTemplate.cc	Implementation of class iImageConvolverTemplate
iImageConvolverTemplate.hh	Declaration of class iImageConvolverTemplate
iImageProcessingTemplate.cc	Implementation of class iImageProcessingTemplate
iImageProcessingTemplate.hh	Declaration of class iImageProcessingTemplate
iOptimizerLandweber.cc	Implementation of class iOptimizerLandweber
iOptimizerLandweber.hh	Declaration of class iOptimizerLandweber
iOptimizerMLEM.cc	Implementation of class iOptimizerMLEM
iOptimizerMLEM.hh	Declaration of class iOptimizerMLEM
iOptimizerNEGML.cc	Implementation of class iOptimizerNEGML
iOptimizerNEGML.hh	Declaration of class iOptimizerNEGML
iOptimizerOriginalAML.cc	Implementation of class iOptimizerOriginalAML
iOptimizerOriginalAML.hh	Declaration of class iOptimizerOriginalAML
iOptimizerTemplate.cc	Implementation of class iOptimizerTemplate
iOptimizerTemplate.hh	Declaration of class iOptimizerTemplate
iPatlakModel.cc	Implementation of class iPatlakModel
iPatlakModel.hh	Declaration of class iPatlakModel
iProjectorClassicSiddon.cc	Implementation of class iProjectorClassicSiddon
iProjectorClassicSiddon.hh	Declaration of class iProjectorClassicSiddon
iProjectorIncrementalSiddon.cc	Implementation of class iProjectorIncrementalSiddon
iProjectorIncrementalSiddon.hh	Declaration of class iProjectorIncrementalSiddon
iProjectorIncrementalSiddonMulti.cc	Implementation of class iProjectorIncrementalSiddonMulti
iProjectorIncrementalSiddonMulti.hh	Declaration of class iProjectorIncrementalSiddonMulti
iProjectorIRIS.cc	Implementation of class iProjectorIRIS
iProjectorIRIS.hh	Declaration of class iProjectorIRIS
iProjectorJoseph.cc	Implementation of class iProjectorJoseph
iProjectorJoseph.hh	Declaration of class iProjectorJoseph
iProjectorTemplate.cc	Implementation of class iProjectorTemplate
iProjectorTemplate.hh	Declaration of class iProjectorTemplate
iScannerPET.cc	Implementation of class iScannerPET
iScannerPET.hh	Declaration of class iScannerPET
iScannerSPECTConv.cc	Implementation of class iScannerSPECTConv
iScannerSPECTConv.hh	Declaration of class iScannerSPECTConv
oAnalyticProjection.cc	Implementation of class oAnalyticProjection
oAnalyticProjection.hh	Declaration of class oAnalyticProjection
oComputeProjection.cc	Implementation of class oComputeProjection
oComputeProjection.hh	Declaration of class oComputeProjection
oDeformationManager.cc	Implementation of class oDeformationManager
oDeformationManager.hh	Declaration of class oDeformationManager
oDirentWin32.hh
oDynamicDataManager.cc	Implementation of class oDynamicDataManager
oDynamicDataManager.hh	Declaration of class oDynamicDataManager
oDynamicModelManager.cc	Implementation of class oDynamicModelManager
oDynamicModelManager.hh	Declaration of class oDynamicModelManager
oImageConvolverManager.cc	Implementation of class oImageConvolverManager
oImageConvolverManager.hh	Declaration of class oImageConvolverManager
oImageDimensionsAndQuantification.cc	Implementation of class oImageDimensionsAndQuantification
oImageDimensionsAndQuantification.hh	Declaration of class oImageDimensionsAndQuantification
oImageProcessingManager.cc	Implementation of class oImageProcessingManager
oImageProcessingManager.hh	Declaration of class oImageProcessingManager
oImageSpace.cc	Implementation of class oImageSpace
oImageSpace.hh	Declaration of class oImageSpace
oInterfileIO.cc	Implementation of class Interfile management functions
oInterfileIO.hh	This group of functions manages Interfile image file format
oIterativeAlgorithm.cc	Implementation of class oIterativeAlgorithm
oIterativeAlgorithm.hh	Declaration of class oIterativeAlgorithm
oMatrix.cc	Implementation of class oMatrix
oMatrix.hh	Declaration of class oMatrix
oOptimizerManager.cc	Implementation of class oOptimizerManager
oOptimizerManager.hh	Declaration of class oOptimizerManager
oProjectionLine.cc	Implementation of class oProjectionLine
oProjectionLine.hh	Declaration of class oProjectionLine
oProjectorManager.cc	Implementation of class oProjectorManager
oProjectorManager.hh	Declaration of class oProjectorManager
oSensitivityGenerator.cc	Implementation of class oSensitivityGenerator
oSensitivityGenerator.hh	Declaration of class oSensitivityGenerator
oSystemMatrix.cc	Implementation of class oSystemMatrix
oSystemMatrix.hh	Declaration of class oSystemMatrix
sAddonManager.cc	Implementation of class sAddonManager
sAddonManager.hh	Declaration of class sAddonManager
sOutputManager.cc	Implementation of class sOutputManager
sOutputManager.hh	Declaration of class sOutputManager
sRandomNumberGenerator.cc	Implementation of class sRandomNumberGenerator
sRandomNumberGenerator.hh	Declaration of class sRandomNumberGenerator
sScannerManager.cc	Implementation of class sScannerManager
sScannerManager.hh	Declaration of class sScannerManager
vDataFile.cc	Implementation of class vDataFile
vDataFile.hh	Declaration of class vDataFile
vDeformation.cc	Implementation of class vDeformation
vDeformation.hh	Declaration of class vDeformation
vDynamicModel.cc	Implementation of class vDynamicModel
vDynamicModel.hh	Declaration of class vDynamicModel
vEvent.cc	Implementation of class vEvent
vEvent.hh	Declaration of class vEvent
vImageConvolver.cc	Implementation of class vImageConvolver
vImageConvolver.hh	Declaration of class vImageConvolver
vImageProcessingModule.cc	Implementation of class vImageProcessingModule
vImageProcessingModule.hh	Declaration of class vImageProcessingModule
vOptimizer.cc	Implementation of class vOptimizer
vOptimizer.hh	Declaration of class vOptimizer
vPenalty.cc	Implementation of class vPenalty
vPenalty.hh	Declaration of class vPenalty
vProjector.cc	Implementation of class vProjector
vProjector.hh	Declaration of class vProjector
vScanner.cc	Implementation of class vScanner
vScanner.hh	Declaration of class vScanner