castor-recon.cc File Reference

CASToR: Customizable and Advanced Software for Tomographic Reconstruction
This is the main reconstruction program of the CASToR software. It reads/parses/checks the command-line options, initialize each manager classes with the correct set of options, and launch the reconstruction algorithm (currently managed by oIterativeAlgorithm). For list-mode datafiles, if a sensitivity image is not provided using "-sens", it is generated before reconstruction (managed by oSensitivityGenerator) . More...

#include "gVariables.hh"
#include "gOptions.hh"
#include "oIterativeAlgorithm.hh"
#include "oSensitivityGenerator.hh"
#include "oImageDimensionsAndQuantification.hh"
#include "iDataFilePET.hh"
#include "iDataFileSPECT.hh"
#include "iDataFileCT.hh"
#include "sOutputManager.hh"
#include "sScannerManager.hh"
#include "sRandomNumberGenerator.hh"
#include "iScannerPET.hh"
#include "sAddonManager.hh"
#include "sChronoManager.hh"

Go to the source code of this file.

Functions
void	ShowHelp ()
	Display main command line options for castor-recon. More...
void	ShowHelpInput ()
	Display command line options related to input settings for castor-recon. More...
void	ShowHelpOutput ()
	Display command line options related to output settings for castor-recon. More...
void	ShowHelpDimensions ()
	Display command line options related to image dimensions for castor-recon. More...
void	ShowHelpAlgo ()
	Display command line options related to the Optimization algorithm module for castor-recon. More...
void	ShowHelpProj ()
	Display command line options related to the Projector module for castor-recon. More...
void	ShowHelpImgp ()
	Display command line options related to the Image Processing module for castor-recon. More...
void	ShowHelpDynamic ()
	Display command line options related to the dynamic features for castor-recon. More...
void	ShowHelpComputation ()
	Display command line options related to the computation settings for castor-recon. More...
void	ShowHelpMiscellaneous ()
	Display command line options related to miscellaneous settings for castor-recon. More...
void	ShowHelpCorrection ()
	Display command line options related to correction settings for castor-recon. More...
int	main (int argc, char **argv)

Detailed Description

CASToR: Customizable and Advanced Software for Tomographic Reconstruction
This is the main reconstruction program of the CASToR software. It reads/parses/checks the command-line options, initialize each manager classes with the correct set of options, and launch the reconstruction algorithm (currently managed by oIterativeAlgorithm). For list-mode datafiles, if a sensitivity image is not provided using "-sens", it is generated before reconstruction (managed by oSensitivityGenerator) .

Definition in file castor-recon.cc.

Function Documentation

int main	(	int	argc,
		char **	argv
	)

Definition at line 611 of file castor-recon.cc.

ShowHelp

(

)

Display main command line options for castor-recon.

Show usage.

Display main command line options for castor-GATERootToCastor.

Display main command line options for castor-GATEMacToGeom.

Display main command line options for castor-datafileConversionEx.

This function is used to print out specific help about the deformation model and its options.

Parameters

a_returnCode

Definition at line 64 of file castor-recon.cc.

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ShowHelpAlgo

(

)

Display command line options related to the Optimization algorithm module for castor-recon.

Definition at line 293 of file castor-recon.cc.

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ShowHelpComputation

(

)

Display command line options related to the computation settings for castor-recon.

Definition at line 473 of file castor-recon.cc.

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ShowHelpCorrection

(

)

Display command line options related to correction settings for castor-recon.

Definition at line 578 of file castor-recon.cc.

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ShowHelpDimensions

(

)

Display command line options related to image dimensions for castor-recon.

Definition at line 254 of file castor-recon.cc.

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ShowHelpDynamic

(

)

Display command line options related to the dynamic features for castor-recon.

Definition at line 410 of file castor-recon.cc.

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ShowHelpImgp

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)

Display command line options related to the Image Processing module for castor-recon.

Definition at line 373 of file castor-recon.cc.

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ShowHelpInput

(

)

Display command line options related to input settings for castor-recon.

Definition at line 145 of file castor-recon.cc.

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ShowHelpMiscellaneous

(

)

Display command line options related to miscellaneous settings for castor-recon.

Definition at line 540 of file castor-recon.cc.

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ShowHelpOutput

(

)

Display command line options related to output settings for castor-recon.

Definition at line 199 of file castor-recon.cc.

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ShowHelpProj

(

)

Display command line options related to the Projector module for castor-recon.

Definition at line 334 of file castor-recon.cc.

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