iDeformationRigid.hh

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/*
This file is part of CASToR.

    CASToR is free software: you can redistribute it and/or modify it under the
    terms of the GNU General Public License as published by the Free Software
    Foundation, either version 3 of the License, or (at your option) any later
    version.

    CASToR is distributed in the hope that it will be useful, but WITHOUT ANY
    WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
    FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
    details.

    You should have received a copy of the GNU General Public License along with
    CASToR (in file GNU_GPL.TXT). If not, see <http://www.gnu.org/licenses/>.

Copyright 2017-2019 all CASToR contributors listed below:

    --> Didier BENOIT, Claude COMTAT, Marina FILIPOVIC, Thibaut MERLIN, Mael MILLARDET, Simon STUTE, Valentin VIELZEUF

This is CASToR version 3.0.
*/

#ifndef IDEFORMATIONRIGID_HH
#define IDEFORMATIONRIGID_HH 1

#include "oImageSpace.hh"
#include "sAddonManager.hh"
#include "vDeformation.hh"
#include "oMatrix.hh"

class iDeformationRigid : public vDeformation
{
  // -----------------------------------------------------------------------------------------
  // Constructor & Destructor
  public:
    iDeformationRigid();
    ~iDeformationRigid();


  // -----------------------------------------------------------------------------------------
  // Public member functions
  public:
    // Function for automatic insertion (put the class name as the parameters and do not add semi-colon at the end of the line)
    FUNCTION_DEFORMATION(iDeformationRigid)
    int ReadAndCheckConfigurationFile(const string& a_fileOptions);
    int ReadAndCheckOptionsList(const string& a_listOptions);
    int CheckSpecificParameters();
    int Initialize();
    void ShowHelp();
    int ApplyDeformations(FLTNB* ap_inputImage, FLTNB* ap_outputImage, int a_direction, int a_defIdx);


  // -----------------------------------------------------------------------------------------
  // Private member functions
  private:
    int TransformImage(int a_direction, int a_defIdx, HPFLTNB *ap_inputImage, HPFLTNB *ap_outputImage);

    int ComputeTransformationMatrices();

    int SetRotationMatrix(oMatrix* apRotMtx, FLTNB a_ang1, FLTNB a_ang2, FLTNB a_ang3, string a_cvt);

    //int Tlerp(HPFLTNB *ap_inputImage, HPFLTNB *ap_outputImage, uint32_t iov, uint32_t iiv, FLTNB dX, FLTNB dY, FLTNB dZ);

  // -----------------------------------------------------------------------------------------
  // Data members
  private:
    vector<string> 
      m_pathToFwdDeformationFiles; 
    vector<string> 
      m_pathToBwdDeformationFiles; 
    HPFLTNB* mp_OriginalArray;       
    HPFLTNB* mp_OutputArray;         
    HPFLTNB* mp_tX;                
    HPFLTNB* mp_tY;                
    HPFLTNB* mp_tZ;                
    HPFLTNB* mp_rA;                
    HPFLTNB* mp_rB;                
    HPFLTNB* mp_rC;                
    oMatrix** m2p_FTmtx;          
    oMatrix** m2p_BTmtx;          
    string m_rotConvention;       
    bool m_cmpTransfoFlag;        
};

// Class for automatic insertion (set here the visible image deformation's name, put the class name as the parameters and do not add semi-colon at the end of the line)
CLASS_DEFORMATION(deformationRigid,iDeformationRigid)

#endif